RNA id: AMCG00009569



Basic Information


Item Value
RNA id AMCG00009569
length 1073
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00009569
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41832871 ~ 41844457 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGGAAAGCAGACACAGCCAAAAGCCCGAGGGGTGATGACTACCGTGCCACTCCCTACTCCTTACTCACTGAATCGAAACTGAAACATGCTGTTGTTCTGTGACTATATTCTCACAGATCAGAGTTGTTTCATCCGATATGCAATCCGTCGGGGACGACCTGGAGAGACTCCGCGGGGACCTAACGTGTCCCATCTGCGCGGAGCTCTTCAAGAAGCCGGTGATGCTCGGGTGCGGTCATCACTTCTGCCTGGCCTGCATCAAATGGCACTGGGAGGCTGCCAAGGAGGGCGCTCGATGCCCGCAGTGCGATCAGCGGGCATCGACCCAAGCCCTCCAAGCCACCCCGCTGTTGGACAGCGTCGTGGCCAGGGTGAGAGAGCTAGGGTCCCAGGGAGAGGGGACGGGAAAACGGAAAAGAGGGATGTACTGCGAGACACACGACGAGAAACTGAAACTTTTCTGCCAGGAAGATCAGGTGCCCATCTGCGTGGTGTGCGGCTGCTCGCAACAGCACAAGAGCCACGTCATTGCCCCGCTGGATGAGGTGCTGCAGGAGTACAAGGTGAAGTTGCAGGCCCTGGGGCAGCAGATCCACACAGAGCTGGGAGCAGCAAGCCAGTGTCTTGGCAAGGTAGAGCACAGGATAGCAGCTCTTAAGGAGGACAGCCAAGCCATACAGCTCAAGATAGCAACTGAGTTTGCCCACATGCGGGCGCTTTTGGACCAAGAAGAGGAGGCTCTGAAAGCCCGCGTTCTGGAAGACGAAGAGGAGAAACGCGGAACGCTGGAGAGCAACCGGATGCATGTTAAAGGGGAAATGATTCGGCTAGAGCAGGCGGCGAGGGACATGCAGGGGGAGGCAGCCCTCTGTGACAGCCCTGCTAGGATCAAGGATCTTACAGTTCTCCTGAGCAGATTTTGGAAGTGCACATGGAACGGCGACGATGACGGCGACGGCGACGGCGACggcgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgacgactggttaaagaaaaataacttctGTTTCATTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72233 lncRNA upstream 15076 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 82727 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 233749 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 332653 41499964 ~ 41500218 (+) True G57690
TU72030 lncRNA upstream 899661 40932967 ~ 40933210 (+) True G57599
TU72317 lncRNA downstream 240822 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 557778 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 571133 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 573684 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 574133 42418590 ~ 42420823 (+) True G57947
AMCG00009568 mRNA upstream 48334 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009564 mRNA upstream 149176 41678552 ~ 41683695 (+) True AMCG00009564
AMCG00009563 mRNA upstream 233747 41596308 ~ 41599124 (+) False AMCG00009563
AMCG00009556 mRNA upstream 244117 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009562 mRNA upstream 264039 41560388 ~ 41568832 (+) True AMCG00009562
AMCG00009575 mRNA downstream 57376 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009577 mRNA downstream 107210 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009579 mRNA downstream 135080 41979537 ~ 42029964 (+) True AMCG00009579
AMCG00009578 mRNA downstream 191561 42036018 ~ 42042211 (+) True AMCG00009578
AMCG00009581 mRNA downstream 231021 42075478 ~ 42078291 (+) True AMCG00009581
TU72035 other upstream 838212 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1727923 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1883671 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2395876 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3375279 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 191561 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2088495 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2542040 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2722908 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2740105 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile