RNA id: AMCG00009570


Basic Information

Item Value
RNA id AMCG00009570
length 1909
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00009570
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41845020 ~ 41849637 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATGCTTTTTTCTTGGGAGAAAGTGAAGGCTTGCAGAATTCACTGACCAAACAGGAGCAGTTCACACCTAAGCTGCTGGGGGATTGGTGGAAGACGCTGGACCACAGCCGCCATCCCACCATCACTGGACCAACACAGAAACAGCCTCTACACATTTTAGAGAACAGCTTTGTGTCGTTTTGTCACAGTTAACAATATTGCTACATCGTTGTGTGTTATTATCTGGGATCTTATTTGTCTTCTTCATGCACCTGGGAAGATGGAGAGGCAGGACACGACAGCTGCCAGGGGCGAGGACATCCCTCTCAGTGCAAGCGCAGATGTGGAAGGTCTTCAAAGGTCCATGAACATGAACCACTACGCCACGAAGAAGAGCGCGGCGCAAAGCATGCTGGACATCGCGCTGTTGATGGCCAATTCTTCCCAACTAAGAACTGTGCTTCACGAAGGGTCGTCTTACCGATACTATtaccccctcctcttcctcatctcCATGTCAATGTTTCTGCAGGTCATGGTGGGTCTTCTGCTGGTCTTCATAGTTAAGTACGACCTGAACGACGTCAAGAAGCAGCCGAAACTGAACCGCTTGAACAACGCTGCCACAGTTCTGGTGTTCTTCACCGTCCTGGTCAACATCTTCATCACTGCTCTAGGTGTGGAATCTGGTCGGATAGTCCTGATGCCTCATGCCCCATCCTCTGACCCACTCCCTAAGGACACAAATCTAACCCATCTTGACAGCATCTAGGGTTGGGAATGTCTCCATGCCACAGACTGCAGAAGCTGCCTCTTACATTCCATTACCCTTCGGACAAAAAGATATGGCTTTACAAAAAGGGATCAGTCGCTCTTGTTCCCAGGACACTCAGGAATAGCTGgacaattgtaaatgtaatttgagtTAAATTACATTCAGTAGAATAGCTGGGATGCACAACAGATCACTTTGCATTGTGGAAAcggcaaatatataaatacagctgtATAGGATAAGGTAGCAACATCCATCAGCATTGAATGATTGGCTAATTAGACATTATAATGGTTTTATCTATAGTTAATTACTCTATAAAGGGCCATAAAGATAAATTttgaatcaataaaatatgcTCCTACTGGTACTAATAAATAGGGTGAGCAGAAACTTTTGCAGCTCTATCCTCTGTGAGACACTGGTGATGGTTCTGGACATGCCAGTTTTGGAAGTTTTGGGAAAGCGTGCCCTTTCACGAGTCATTGATCTGGCTAGATATTGATCAGGAAAccttgtgtgtatgtaaatggAGGCTGCACCGCAGTAAACATACCATATATAACTTTTATACatctttgtttattgtaaaaatatCTTGTTAAAATATGATGGAACCTGAAAGGGGAAGATCAGGGAAATAATGTTCAAAATGTGCATGtactttgttgttgtgtttttgtactTGCCAGTATAAAATCTGTAAAAGACATGGATGAAAGCTTTGATATTTTACTGTCTTGGTGCACATAGGCATTAAAATAGCATCGCAACGCTTATGTCCGTGTGTTAAAACAGTTTGAAACTAATATTCATGAGCATTGGAAGGCAACGCACAAACATCTGGTTTGTAATCAATGAAGGTGGGCAGTTACTTGTTAACATAGCAAGATGCCTTAACAAGAGTAGTTACCTtactttctgtgtctgtttaaCATGTTCAGCGGGTTTgacatgcagtgttttataGGGCCCTGATGGGAGCGCACATGGGGACTTGAACAGAGGggtaaatgtgtatatatagagcATTTGATATGTGACAGTATACATGTGAATTGAGGCACTTTGTTTAGCCCCAGAACTGTTTTTGTATGAATTGCTTGATATGTATAACTACAggtgttgtaaaataaaatatacattatttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72239 lncRNA downstream 29213 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 911810 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1067936 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1501541 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1685412 40159397 ~ 40159608 (-) True G57524
TU72308 lncRNA upstream 191562 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 323621 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 355633 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 618548 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 628084 42477721 ~ 42478112 (-) True G57988
AMCG00009571 mRNA downstream 18086 41814559 ~ 41826934 (-) True AMCG00009571
AMCG00009572 mRNA downstream 56021 41787613 ~ 41788999 (-) True AMCG00009572
AMCG00009567 mRNA downstream 144263 41684512 ~ 41700757 (-) True AMCG00009567
AMCG00009566 mRNA downstream 192098 41649282 ~ 41652922 (-) True AMCG00009566
AMCG00009565 mRNA downstream 235631 41606797 ~ 41609389 (-) True AMCG00009565
AMCG00009573 mRNA upstream 501 41850138 ~ 41863329 (-) True AMCG00009573
AMCG00009574 mRNA upstream 17904 41867541 ~ 41874590 (-) True AMCG00009574
AMCG00009576 mRNA upstream 33789 41883426 ~ 41895243 (-) True AMCG00009576
AMCG00009582 mRNA upstream 193859 42043496 ~ 42055041 (-) True AMCG00009582
AMCG00009583 mRNA upstream 224273 42073910 ~ 42082769 (-) True AMCG00009583
TU71924 other downstream 1687549 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3007456 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3262200 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4624944 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5972423 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 819490 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1632784 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2139874 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2658616 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2692257 44541894 ~ 44542809 (-) True G58584

Expression Profile