RNA id: TU72239


Basic Information

Item Value
RNA id TU72239
length 1207
lncRNA type sense_over
GC content 0.37
exon number 1
gene id AMCG00009571
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41814559 ~ 41826934 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGACCCGTGCACCCCTGTAATGTCCTCACGTTTACTTTTGAAggttctttttccttttcacttGCTGAACATTGTCGGTAAGACTTTCTTTTCCCGTTCTTTGAATACATTCAGTATTTATAGCAAACATGCACTTTGGGATGAATGTATGTAAAGAAAGGGTGTCCAATGCAGTACCTCTACTTCCTGCTGCAATGTTGaacaatgtaaataatataatagtcATGGCAATAGATATTTATCTCTTTAAATTCCTGAGAGGTGGCTACGGGACAAGTCCATTTTGTTGTGGTTTGCTTTATGGTAGGTGTGGCCCCTAGGAAGATGAAACTTAAAggctctgtttttattttgtttctttgccatacaaaatgtcaaaagcaAGGAACTGAAAGTTATCAACTGAGATCAGTGTTGACTAAAAGCCATACAAACTTGGAGAGAGAGTGGCTTATGCCCTACTACTGAAAATCTGTACAAGTCCACCATTTGTGCTAGAGGTTGATTTCCTaatatcattcatatttttctctctaCAACTCCAGCACTCATGTAAATATATTAGAAGTATCTGTGGGATTCTTAACTCAAAAGGAGGAATAACACCTACACAAGTCTAAGATACGCggtagaaaaataaagacactgcaAACATACACAGTGTGctccaaacaaaatgttattcaaCCCAAGATTTGATGAGATCCTAATCAAGCAATTGTATAGGAAACTTGCAAGGGGTTATGAGTGAATTCAGTGTTCGTACTGTTTAGCACTAACTTTGGAGTCAAGAACCCACTGTTTTATAATCCACTGTCCTCTCCATTAGAAAAGCATTCCAGCTGTATGATTTGACATTATAGCTGATGTTTTCAAACTGGTCTGTTGGCTCCGTCCACGCAAACTCCCAAAAAGATACAGAATAACTGTAGGAAAGCAGCTACAGAGTTTATAGATCTGATTACAACCCCAATTGTAAAAACTATCCATGAAAATGGGAATATATACAATTTTCCCTTTAGGTctaaatttatatttactgtatagaAAAATTTGCCTAGCTTCAGAATATTGGATATTGTGTGCAGAACTGTATAGACATGCATCAGTTTCTGCTTTGTTGTAAATTCCCATGTGGGATTGTGTGGGGATGGTCTTTAATTTGAGAAGAAAGTTGTTTTAAAAGGTCACTCATCACATTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72031 lncRNA downstream 881391 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1037517 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1471122 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1654993 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 1940372 39873971 ~ 39874229 (-) True G57400
TU72308 lncRNA upstream 225392 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 357451 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 389463 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 652378 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 661914 42477721 ~ 42478112 (-) True G57988
AMCG00009572 mRNA downstream 25602 41787613 ~ 41788999 (-) True AMCG00009572
AMCG00009567 mRNA downstream 113844 41684512 ~ 41700757 (-) True AMCG00009567
AMCG00009566 mRNA downstream 161679 41649282 ~ 41652922 (-) True AMCG00009566
AMCG00009565 mRNA downstream 205212 41606797 ~ 41609389 (-) True AMCG00009565
AMCG00009560 mRNA downstream 230140 41574140 ~ 41584461 (-) True AMCG00009560
AMCG00009570 mRNA upstream 29213 41845020 ~ 41849637 (-) True AMCG00009570
AMCG00009573 mRNA upstream 34331 41850138 ~ 41863329 (-) True AMCG00009573
AMCG00009574 mRNA upstream 51734 41867541 ~ 41874590 (-) True AMCG00009574
AMCG00009576 mRNA upstream 67619 41883426 ~ 41895243 (-) True AMCG00009576
AMCG00009582 mRNA upstream 227689 42043496 ~ 42055041 (-) True AMCG00009582
TU71924 other downstream 1657130 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 2977037 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3231781 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4594525 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5942004 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 853320 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1666614 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2173704 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2692446 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2726087 44541894 ~ 44542809 (-) True G58584