RNA id: AMCG00009572


Basic Information

Item Value
RNA id AMCG00009572
length 646
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00009572
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41787613 ~ 41788999 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATAATATTGCCATTGAAATCAAGAATGATTTCCAGGACATAAAGGTCATAAATAAAGATGGTATGAACCGTCCAGCTGTTGAGAAGTGTGAGCCAGGAATTATCCCTCCATTCGTCAGTGGCTACTTCTTCTTGAACACGTGGTATTCGACCTACTGCCAGGCAGGCAGCTTCTACAGTGAAGAAGCCCTCAACAGCTGTCTGAGGGGCAAGAGAATCTATTTGAGGGGCGACTCCACTGCACGCCAGTGGCTGGAATATCTGGAGAAAAGCCTTAAAGAGACCTCTGGAAGATGGGCCATCGAAGGGGGGAAGGACGTGGTGGTGGTGATCTCGGTGGGGCAGCACCTCCGGCCCTTTCCCCTGGAGCTCTTCATCAACAGGATGCTCAGGCTGTTTCGCAGCCCCCGGACCACCATCGTCATCAAGCTGGAGAACACCAGGGAGCTGACTTCGGAGATGGTGCGCTTCAGCGACTTTCATGGCCACCTGCACAACATGGTGCAAAGGGAGGTGTTCGGGGACCTGAGGGTGGGCATGGTGAACGCCTGGGATATGACGGTGGCCGACAACACAAGCCTCACCCACCCgaataagaaaataatcagaaaCGAAGTGTCCTTGCTTCTCTCCCAGTTCTGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72031 lncRNA downstream 854403 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1010529 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1444134 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1628005 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 1913384 39873971 ~ 39874229 (-) True G57400
TU72239 lncRNA upstream 25602 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 252200 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 384259 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 416271 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 679186 42468185 ~ 42468759 (-) True G57982
AMCG00009567 mRNA downstream 86856 41684512 ~ 41700757 (-) True AMCG00009567
AMCG00009566 mRNA downstream 134691 41649282 ~ 41652922 (-) True AMCG00009566
AMCG00009565 mRNA downstream 178224 41606797 ~ 41609389 (-) True AMCG00009565
AMCG00009560 mRNA downstream 203152 41574140 ~ 41584461 (-) True AMCG00009560
AMCG00009559 mRNA downstream 215446 41570613 ~ 41572167 (-) True AMCG00009559
AMCG00009571 mRNA upstream 25560 41814559 ~ 41826934 (-) True AMCG00009571
AMCG00009570 mRNA upstream 56021 41845020 ~ 41849637 (-) True AMCG00009570
AMCG00009573 mRNA upstream 61139 41850138 ~ 41863329 (-) True AMCG00009573
AMCG00009574 mRNA upstream 78542 41867541 ~ 41874590 (-) True AMCG00009574
AMCG00009576 mRNA upstream 94427 41883426 ~ 41895243 (-) True AMCG00009576
TU71924 other downstream 1630142 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 2950049 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3204793 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4567537 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5915016 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 880128 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1693422 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2200512 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2719254 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2752895 44541894 ~ 44542809 (-) True G58584

Expression Profile