RNA id: AMCG00009573


Basic Information

Item Value
RNA id AMCG00009573
length 3834
RNA type mRNA
GC content 0.42
exon number 11
gene id AMCG00009573
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41850138 ~ 41863329 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCCCTTACTCCACACAGCCACGCCATTCAGGCAACAAtcatgaaattacatttatttcatttccaaAGCAGCATCGACCAATCAAATCAGGTTTCGGAGAGCGAAAGTGAAAGTGCAGGCTGTGCTGTGCGGCGGGGCGCTGGTGTCGGTACTGGGGTGCTGGTTCATTATCCTTACAGACTTACAGACCCTGAGGTCCAGCGTGCGTGTTCACAGGCGTGTTCACAGGCCATggagatgaagatgaagactttgttgtttcttgtttgcatCGCGACCGTTTCTTCACaggATGTCCACCTCTCCACAGAGCCTGAAATCCGGGGCACTCTGTCTGAGAAGGTATCAATTTCGTGCCAAATCTCGGGCAAACACAGTGCTGAAAGAATGACAGTGAGATGGTTGAAAGGCAAACAAGAGGTGTACACTTACCAGGGTGCCTCCGGTACAGGCAAGGCAGGTGCAGCGTACCTAGAACGAGCAAACCTTGTTGAGAAAGCCCTAAGCACAGGCGATGTATCCCTGCTTCTCTCCAACACCACCATCACCGATGAAGGAGAATATACTTGCAGCGTGGGAAGCTCTGCCCTGGCCACGACACAGCTTAAACTAGGCAGCCTGGGCACCCGACCTATCCTGGTCATGGACAAGTTTGGTTCGGTAcgctccctgtctctgtcctgcAAGTCCGAAGGCTGGCATCCCATCCCCGAGGTGGTCTGGACCGCCGGTGATGGTCAGACGCTTTCTGGGCAACCCGTAAAGACATCCCCGGGCTCTACTGGGTTGCTCAATGTACTCAGCTCAATTACTCTGACAGTAGAGGACGGCTCCAAAGTCACCTGCGCTATCATCAACCCCGTACTCGCCACCAAAACTCAGGAGACCCTCAAGATATCCGagaaagaaagacaggcCAAGGAAGCTGagaGGGAACCCCTTCTTGGCGCGCACGaaaataaagacaagAAAGAGACCAAAGAAGAATACGTCAAGTTGAAGAAGGAGCTTTctGAAGCTAGGGTGGTCAACAATTCAGAGTGGAAACGCATTCTAAGCAAGAAACATGTTGGCATCTCCCTGACTAAGGGCTCAGAGGGCCCAGCCTTGGCAGAGGGGAATCACTACTGGGAGGTAGAGGTGGGTGAAAAGAAGGAGTGGATAGTGGGAGTGAAGAAGGATGGTGTGACCGTTACTGAAAAGTCCTCCACGAGCGAAGGGGTCTGGGCTCTGTCCTGCAGCGAGACGACAGGCTATCGCGCCCTGCTCCCCAACCCTTTCCCCATCACCCCGGCCTCGCCTCCGAGGAAACTGGGCTGCCTGCTGGACTACCCGGAGGGGCAGCTCACCTTCTACGACGCGGATAATAGACACCGTCTGTACACCTTCGATACCAAGTTCGATGCACCACTAAAGTCGTTCTACCAATAAAACCAAATCGTTTCACTTTGTCCCACTCCTCCAATCAACAGCGCTGTGTCTTTTAAAGAGTCTTCCCAGTTGTCCCCCTCAAAGAGATAATGCTGTCAAGGAATGGCATCGACTCTCTCATTAGACTCCCGTTTCAAATGTCTTTATCTGGAAATTCCTTTAAAATACCACATGCTTCCAATTTTCCAGGTTTACCAACCACTACTACCCTGAACAACAGCCCAAATACTGTCATGGCAATGTGTATAAAGCATAATCGCATACTCTGTTTTCAGCTAGAAAACACTAACTGTAAACTGGAGCCCTCAGGGTATTAGTATTAATTCATGAATTGGGGAAAATAATTTGATTCCTCCCAAAACAAGAGCTCAAGTCACTCTTATCgagggcaacttacaatatataagcgcaatataaagtgcaaaaatacagttcagttcaaggcataaaacattacaaattccaatttacataatacaaagcaattcaaagcataatatatttgacaaattccaatttacccaagtgtatacaatatatgaggtcttgcATCTGGACTTAGTCATTTAGGTGGCATACCAGGGTGGATTACCAGGTGTCAGTGTTGTCATCAGATGTTCTGTGTGTGCAATTCACATAACAATGAAGCGAAAGAAATGGGACACTCAGATCTCCTTACAATGTGATGTCACTGCTTACATGGATGTATAACAGAAAGGATCGTCACAGAGAAGCTTTGCAGAGCTCTCAGCCTTACCTAAAGAACACGGCCTTTCTGTTAGCCTTGCCGTTTGACAGTCGTCAGCCTTCTAAGCCAAGTTACCTACTTATGGAAGTGTTGGTGTCTGCTCTCTTGTGTGCTTAGCGTTTTGCTGCAGTTCAGTGAAGCCAAAACTGCTTTTCTAAATCAAAAAAAGATTGCGGTGTTTGGCAGTGCAACCTGAATCTACTTGTTGATAACAGGAGAAagtgctgtatttttgtttcttctaaatactttacattttctgatCGTCATGAACAAtttgcagcattttattttctaatttacatttttttattttacagttattgATTTCATAGGTTTTGGATAGTGTTGCTGTGAATGTCTTAATTCATACTCCTGTTTAAATTCTGCCACTGCCCTGGTTTTTGGAGTCAAAGTTTAATAATTTACACATGGTTAAGCAAGATCAGAGTTAGATCAGAGTTGTCCCAGTTTAGTCCTTTAGTCCAAGGTCTTTGTGTACTGGCAAAAGATGAGATGTTTTTCTGTAAAAGTCCCATATATGTGTACCGACCCGCAGTGTGCAGGATTCAGACAGAGGAGACACTTAGAGGCATGCTGAAATAAGCAAACTGTGATCATGTCCTGTCGATTTGCTTCAGGGTCTTGTCATTTGAGAACTTTACATCTACATTTGTCTTCAATGCCAGCcacttcctttatttttttttgcgaAACCCACATAAAAGCTTGTCTTTGCTTTCAACGAGTTGTTCTATTATTTGGagcatttcttttcaaatctGAAGTGCTTTACAGAAGTTtgcgtatttttttttttccactataAAGAGCCTTTTTAAGGATGACCGAGATCATTTAGCATTTTTATgaaagctgtttgttttttgtgaaagcTTCTATCATTTATCAGGTGCCTTATTCTTTTAaccagttttattaatttgtttcctcacacacagtgttttcttgttttaactgtaattatttaccaagtttctttatttttcaagaaatgtgtacacaatggtaaaaaaaacacactgaagatTAATCAAACTTCATCACCCGTACatcttatatataattatgtgtgTGAATTGAATTGTAAGGGTTTATTACCTGTCAtagaacattgtgtgtttttctatcATAAGGAAATTAGatttatactattttatttccttgaGCATATTCACAATGTTAGAGGGTGGGGTTGTGGGGAGgttgtgttattttcaaatttaatttggGCCACTATGTCATAAACACACATCTGTGTTGTATCAATTGCAATTACCGTTTCCCAAGTTAATTAAGTGCTTTGGGGTCTTTGTTCCTTTTCTCAAGAAATTcaaatggatacattttaaagggaatCTGGTATGTCTGATAATGCTAAAAATATACAGaaggatagatagatagaaatgcatatgtaaatgtttctgGTTGTGTAagttcatttttacatttgtaatgtttttgttttttctgttagtCTTATAGGGTACTAACATTTGTGCACAGTATTTCTTTCTAaagatgaatgcattttttttagtaattgaagtatttaaataattgtcagGTAACAACTGTACAGCTAGCACAAATTGTGGAAGAATGCTTCAGTTTCATTTTGccataac

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72239 lncRNA downstream 34331 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 916928 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1073054 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1506659 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1690530 40159397 ~ 40159608 (-) True G57524
TU72308 lncRNA upstream 177870 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 309929 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 341941 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 604856 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 614392 42477721 ~ 42478112 (-) True G57988
AMCG00009570 mRNA downstream 501 41845020 ~ 41849637 (-) True AMCG00009570
AMCG00009571 mRNA downstream 23204 41814559 ~ 41826934 (-) True AMCG00009571
AMCG00009572 mRNA downstream 61139 41787613 ~ 41788999 (-) True AMCG00009572
AMCG00009567 mRNA downstream 149381 41684512 ~ 41700757 (-) True AMCG00009567
AMCG00009566 mRNA downstream 197216 41649282 ~ 41652922 (-) True AMCG00009566
AMCG00009574 mRNA upstream 4212 41867541 ~ 41874590 (-) True AMCG00009574
AMCG00009576 mRNA upstream 20097 41883426 ~ 41895243 (-) True AMCG00009576
AMCG00009582 mRNA upstream 180167 42043496 ~ 42055041 (-) True AMCG00009582
AMCG00009583 mRNA upstream 210581 42073910 ~ 42082769 (-) True AMCG00009583
AMCG00009585 mRNA upstream 221952 42085281 ~ 42102235 (-) True AMCG00009585
TU71924 other downstream 1692667 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3012574 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3267318 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4630062 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5977541 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 805798 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1619092 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2126182 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2644924 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2678565 44541894 ~ 44542809 (-) True G58584

Expression Profile