RNA id: AMCG00009574


Basic Information

Item Value
RNA id AMCG00009574
length 852
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00009574
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41867541 ~ 41874590 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTTTCGATCCCATGGAGCCTGCATACAAAACCTCTGTGGCCAGAGCCTGTGCTGAAACCCACGGGAAAGCCCTCACAGCCAAACTCAAAGGCTGTATTGTACAGAAGTGTCAAGGAATTGCCCATCATTGTGGAAAGGACATGATGGATTCTATTGCCCATCTCTCAACGCAGAACTATATCCATCAGATGCAGCATAACACAGAAGaCTTCCTCCTGTGCTTAGTCCAAAAGTTTATCCTTGCGACTGCTGAATGCTGATGTGCAGATCCTGCTAGAACCTCAGACTTCTCTCTTCCTCGTCGCTTCAGAATCTAAGACGTTGGTTTCACGGAGTCTCTGTACACGATCTGACATCTCTGTGTGATTATTGTGatttagtgtgtttttaattcatcCCCTGCCCCCTCTGGTTCTGTACAaatctgtgtccctctctctgctaTACACACTACCagtctgttttttctctccatccAGCAATACAGCAATACCCTAAAACAAATCAGATGTACATTATGCATAATACACTATTACATCCCAGATGTGTATTGAAAAGAGAAATGCAGGCATGTGTTCTATGTAGTGGAACAGTGTAGATTTTGTCATTGCTCTAGACCAGGAGTGTGATTATGTTTGACTGGTTTGAGAAACatttgcctggactgattgaaatatttttccaaccaaaacaaaagcttCTCATAAGAAGAATTTATGAAAACCAAGAAAAGactgtattaaattatttattctacactatatttcactgttaaatatatttttccaagatTATTGTACCTTTTACCTAATCAGCACTCAAACACATGACATTAAAATCATTTACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72239 lncRNA downstream 51734 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 934331 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1090457 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1524062 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1707933 40159397 ~ 40159608 (-) True G57524
TU72308 lncRNA upstream 166609 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 298668 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 330680 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 593595 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 603131 42477721 ~ 42478112 (-) True G57988
AMCG00009573 mRNA downstream 4212 41850138 ~ 41863329 (-) True AMCG00009573
AMCG00009570 mRNA downstream 17904 41845020 ~ 41849637 (-) True AMCG00009570
AMCG00009571 mRNA downstream 40607 41814559 ~ 41826934 (-) True AMCG00009571
AMCG00009572 mRNA downstream 78542 41787613 ~ 41788999 (-) True AMCG00009572
AMCG00009567 mRNA downstream 166784 41684512 ~ 41700757 (-) True AMCG00009567
AMCG00009576 mRNA upstream 8836 41883426 ~ 41895243 (-) True AMCG00009576
AMCG00009582 mRNA upstream 168906 42043496 ~ 42055041 (-) True AMCG00009582
AMCG00009583 mRNA upstream 199320 42073910 ~ 42082769 (-) True AMCG00009583
AMCG00009585 mRNA upstream 210691 42085281 ~ 42102235 (-) True AMCG00009585
AMCG00009584 mRNA upstream 269002 42143592 ~ 42162603 (-) True AMCG00009584
TU71924 other downstream 1710070 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3029977 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3284721 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4647465 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5994944 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 794537 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1607831 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2114921 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2633663 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2667304 44541894 ~ 44542809 (-) True G58584

Expression Profile