RNA id: AMCG00009575


Basic Information

Item Value
RNA id AMCG00009575
length 2645
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00009575
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41901833 ~ 41910118 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTTTTATTAGTGAACTACAGTATTTTAAGCGTCTTTTAGGTTTGCATCATACGGGGCAATTCGAGATGAAACAACAGCGAGATTAGTTGTGAAAAGTCGCCATTGCATTTCTTAATACCACAAGACAACGCCGTCCAGATGGAAGTCGCCGGAGCAGCCGGGGGCTCTGACGTCACAACGCCGCGACCCAGCGAAGGCGACATCAAAACCCACTTCAAAGTGTGCCGCTTCATCATCGAGGCGGGAGTGAAGCTGGGCATGAACTCGGTGCCCATCGCCACGGCCTGCACTGTGTATCACCGCTTCTACCAGAGCGCCAGCCTGCAGGTGTACGAGCCGCACCTAGTCGCCATGTCAGCCATCTACCTGGCGGGCAAAGTGGAGGAGCAGCACTTGCGGACCAGGGACATTATCAACGTGTGCCACAGGTACCTGAATCCCCAGAGCGAGCCTCTGGAGCTGGACAGCCGCTTCTGGGACCTGAGGGACAGCGTGGTCCAGTGTGAGCTGCTCATTCTCCGGGTCCTCAACTTCCAGGTGTCCTTCCAACATCCCCACAAGTACCTCCTGCACTACCTGGTGTCTCTGCAGAACCTCCTGAACCGGCACGCCTGGAGGCGCACGCCCATCGCCAAGACGGCCTGGGCCCTGCTGAGGGACAGCTACCACGGCAGCCTGTGTCTGCGCCACCCCCCCCAGCACATTGCCGTGGCTGTGCTGTACCTGGCCGTGGAGAGCTACGGGGTGGAGGTGCCGGGCGACTCGGGGGCCGGGAAGCTTTGGTGGCAGGTTTTCAGTGACGACTTAACTAAACCCATCATCGACTCCATCATCTCTGAGCTCCTGCAGCTGTACGACCTGGAAGCCAAGTGCATCTGAACGGAGCCGCGTGTGGGAACGGCAGGTAAAGGCAGTGAGTCGGCCCAAGTCGCAGattgtTGGAAATTGCTTGAACCAAGTGGAAGAGAACCTGCCGTTCGTTGTCTTGCACCAAAGCCCTTCCACTGGGAGCGTGAGAACCGGCGCTCTCGCCGCAGAGCCGTGTGCAGACCCGAGGACAGAGCGGCCCAGAAAAGTGATCGCGGTGTGACCCACTGGCGCGGACTTGTGTGCTCTGCAGGTGCGATCACTGTTGTCCTACTTCAGAGACGCTCAGTGTGAAGTGCATGTGGTTCCCATTTTGCCCACAAGAGGGCGGAAGGACTGGACTGCTGTGTTTTGCAGCTCGACAACCTgcgggagaaaaaaaaaacaaaaaaaaactcttctGTGATGTTGCTTTTGGGGGACGGCTGATCCTCTGTGACCTGAGACTTGAGTTTGATGTATAAGGGGCCTGTTAATGCGCAGGACTGCATTTGCATGAATACCAAATGCCGATCTGTGCAACAAACCTCACTTTCCTAGTTTATCCACTACTGTATGAAAGGTGGAAGGCAGATCGGGATGCACAGGACTGCAAAGAACGTTTGTGCATCTCTGTCTGTTCAaccctcctccacctccttccCGTTATTCCCGTTGAGACTAtcagtgttgttgtgtgtgtgcctgtcctgttgtttctctgcatttcttaagtgtgtgtttttaacaaaacacaataaggGAATCGTGCAGCAATGCCCTTAGGGAAACTAATACGACTCCCCTTGCATAACTGTAAAAGCCATTTCGGGTTTTAGGCACTCTGGGCTCTGGTATATAAGCTAGTAGGGGCTGGATATTTCTAACCGCTAACTTTAACAAGTCTTGGCGTGCAAATGTTTGGATCGTGCAGCTCCACTGAGTCAGCACCACAACCTGGAGCTCTCAAAACCCAAAATGATGTTCTTTAATCTGCAGTGGGTCTTTAAACCAGGATTCTTCAAGTTATGAAGCGTCTCTGCCCTGTATTCACTACTGCCATGGCCGGttcattatttgtaaatatatataaataaattggaGTGGTTGGTGTCATCAAATGCTTTTAGTATGTTTATTCAAATTGCTCTGATTGTGCATGTGTGAATCcagtagtatttttaaatattagcgTGCTTAAACTAATGCTATTGCTCAGATGCCTTCAGGCCACTTAAACGAAATGTCCTagtttgaataaatattttaattagttcaTAATTCGTGGATATTGCGAGGATCAACCACAACCACTCCGGTGTCTAAAGAATCTAATCTAGCAGTCCGTTTTCTTCTGTGTGGGAAATAAGAAACTGAGTCACACATTCCTTTAACTGTGTCAATATGGTCATTTTCGATGGTTATTGCTTAATCGTAATCTAAATTCATTCCACATATGTGAACcctagattatttttttttttatgttttgtgtttgaaaacattCCCCTTCCCTCCAGTACATAAACATTTGCTTTGCCATCTGGCAGTCGTCTCGCTTAACACCAGTCAATATGCTCCTAATGTAGCGCTCCCTTCCTGCTAATGTAGGTTAAAGTAAAAGTGTATCGATCTCTTAATTTGGTTTGGAGCAAAGCTTACtaacaaatctaaaaaataaataaatacgaaaGCGAGAACTCTGTTTCGGGATCAGTGCTTTTTTAACTCTGCGTGGAGTTGGTGGGGCGGGAGAGATAATGGCATTTCCGACCACAGCCGGTTGACCTGGGTGGC

Function

GO: NA

KEGG:

id description
K23964 CCNQ, FAM58A; cyclin-Q

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72251 lncRNA upstream 62367 41839165 ~ 41839466 (+) True G57792
TU72233 lncRNA upstream 84038 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 151689 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 302711 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 401615 41499964 ~ 41500218 (+) True G57690
TU72317 lncRNA downstream 175161 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 492117 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 505472 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 508023 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 508472 42418590 ~ 42420823 (+) True G57947
AMCG00009569 mRNA upstream 57376 41832871 ~ 41844457 (+) True AMCG00009569
AMCG00009568 mRNA upstream 117296 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009564 mRNA upstream 218138 41678552 ~ 41683695 (+) True AMCG00009564
AMCG00009563 mRNA upstream 302709 41596308 ~ 41599124 (+) False AMCG00009563
AMCG00009556 mRNA upstream 313079 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009577 mRNA downstream 41549 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009579 mRNA downstream 69419 41979537 ~ 42029964 (+) True AMCG00009579
AMCG00009578 mRNA downstream 125900 42036018 ~ 42042211 (+) True AMCG00009578
AMCG00009581 mRNA downstream 165360 42075478 ~ 42078291 (+) True AMCG00009581
AMCG00009580 mRNA downstream 260228 42170346 ~ 42175700 (+) True AMCG00009580
TU72035 other upstream 907174 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1796885 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1952633 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2464838 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3444241 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 125900 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2022834 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2476379 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2657247 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2674444 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile