RNA id: AMCG00009576


Basic Information

Item Value
RNA id AMCG00009576
length 2506
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00009576
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41883426 ~ 41895243 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGCTGCGGCAGCTACACACTCGGCTGTCTTTCGCGCAAACACACGCATGCATGTACACCTAACACACATGTCACCGAGGGACGGGACCCCGCCGGGACACAATAGCCCGTCTACCGTCCCGGTGATGCTATGCAACTCTCACCAGTGCCTGAACATCCCACACGCAGCGGACACGCGTGTATACGAGCATCGCAGCTGAACCGCAGCGCTCACATAGCCCGGGCTTCCTCCCgcattgtgtttattctgtaAAGACATCCGGACGTCCTTCGTGCTTTGAAACGAAAGGGAAAAGGATGTGCACGCAGACCGCACGGCTGCTGCGGGTTTATAGCGCCCGGCTGTGCGTGGCGAGGCGTGCGCTGTAGAGACGCGGCGCACAGAGGGAGTTTCAACAGTCCCGCCTCGGTGTCCAGACACTTTCTTTCCACCGACCTGCCAGGGTGTTGACAGCGGAGACAACTCATCTTACTCGGATCGTCTTGCCGTGTTTCTCCGTTTCTCCGATATGCCGGCTATACTTGTGCATTAACCTCCGTCTCTCCAGCCGAGGCCAGAGAATGAGCAGCCgaaagttaaaatacaaatacaaatacaaagtggCATGCATGTGCGCTGCGTGTGCCGCAGCCCGCACTGGGAGTGAGTGAGCAGACTCGGCTCCGGGCTTTACCCGGCGCTCAGGTTTGCTTCTATTGCGAGAAAAGCAGTGCGTGTTTTTGTGAATGACTCAGGGTGCCTCGCCTCCGGTCTGTGCATCCCTCCCCGCGGTGCTGAAGCCCAGTTTGCTTCTTTATCATTTCTCATATTATCTGTCATTGTCCCGGAGTCTTCAGACAAGCGCAGCTGGACTGCTAGCaggagagaagaagaagaaagcacGGGGGGTTGCAAGTATGGAGGCGCTGGCCCGATCGCCAGCCTGGTTGTGTGCCGAGCTTGATTCGGGCCCTCAAGCCAGGGTCTTGGTTTTGGACTGTCGCCCTCGAGAGCACTACGAGGAGGGCCGTGTGGCCGGGGCCATCAGTGTGGCCATCCCCTCCATCCTGCTGCGGCGGCTGAAGCGGGGCCAGCTCGCCATGCCCTCCCTCATCCGCTGCCCCCAGGAGCGGCAGGGGTTCGCCAGCCGCTGCGCCACTCACGCCATCCTCCTGTACGATGAGGGCCAGGAGGCGGGCCCTGGCGGTGGCCCCTCCCCCacgcagcagcaggaggaggagtcCATCCTGGCCGTCATGCTGCACACGCTCAGGAAGGACGGCTGCCAGGCACTGTTCCCCCAACACTGTGAGAGTGGTACCAGTGTGGCCGCACGTTGGCTGGCGCCCCCCGCCTCGGTCCTGGGCCTGGGCGGCCTTCGGCTGGGCTCCTTGGGCTCCGATGGGGATTCGGACCCTGACCGGGACCCCCTGAGCGCCACGGGCCCGGAATCGGACGAACCCAGCCCCAGCGCCCAGCCCCCCTTCCCAGTGCAGATCCTGCCCAACCTGTACCTGGGCTGCGCCAAGCACTCGGCCGACCGGGACACGCTGGCCAAGCTGGGCATCCGCTACATCCTCAACGTCACCCCCAACCTGCCCAACATGTTCGAGAACAACGGTGACTTCCGCTACAAGCAGATCCCCATCTCGGACCACTGGAGCCAGAACCTCTCGCAGTTCTTCCCAGAGGCCATCCAGTTCATCGacGAGGCTCTGTCCCAGCGCTGTGGGGTGCTGGTGCACTGCCTGGCGGGGGTGAGCCGCTCAGTGACGGTGACGGTGGCCTATCTGATGCAGCGGTTGGGGCTCTCCCTGAACGACGCCTACGACTTCGTCAAACGTCGCAAGTCCAACATCTCGCCCAACTTCAACTTCATGGGCCAGCTGCTAGACTTCGAGAAGACGCTGCGCAGCCCCTGCGACCGGCCAGCTACCGAGGAGCAAGCCTTCTTCACCCCCCCGGCCAATCAGGATCCAGAGCCGCCTCCTTCCCTGTGAGGACGGTCCACTCTCTCTTTGCCCTTTCGATCTACAATGGGTTCATGGGTTGGCGACACGACGACCACCTGACCAAAATCAAGCCAATGGACGGGAATCCCCCGATCCGCACTGCTGGGGGCATCTGTATAATGCAACTGGATTGCGAGACCGTGATCGAACACAAGCACAAcgcatttttcttcttccagcCTTCGAAGGGATCCAATTGTAAACCAAACTGGCAATCGACTGTTACAGGCCACAACACGTGGATGTAATCTGAATGTATGTAATCCTGCTATCGTCTTGAgatgcagaaaaagaaaaagcttttaatatgATATAAAGAAGTCGCTTTTGTATAGCAATTTGTTGCTGGGCACATCTTGctactgtttttatatatctattttttttacgtgtttgttttttatataccTGCTTGTACGctcatttcctttctttttccgTTCGGTAGTAACCtggttcttttttgttgtttggtaGTTGCTTTTAAGTCAATACTCAACTGTCAATAAAGC

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0005829 cytosol cellular_component
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72239 lncRNA downstream 67619 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 950216 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1106342 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1539947 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 1723818 40159397 ~ 40159608 (-) True G57524
TU72308 lncRNA upstream 145956 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 278015 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 310027 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 572942 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 582478 42477721 ~ 42478112 (-) True G57988
AMCG00009574 mRNA downstream 8836 41867541 ~ 41874590 (-) True AMCG00009574
AMCG00009573 mRNA downstream 20097 41850138 ~ 41863329 (-) True AMCG00009573
AMCG00009570 mRNA downstream 33789 41845020 ~ 41849637 (-) True AMCG00009570
AMCG00009571 mRNA downstream 56492 41814559 ~ 41826934 (-) True AMCG00009571
AMCG00009572 mRNA downstream 94427 41787613 ~ 41788999 (-) True AMCG00009572
AMCG00009582 mRNA upstream 148253 42043496 ~ 42055041 (-) True AMCG00009582
AMCG00009583 mRNA upstream 178667 42073910 ~ 42082769 (-) True AMCG00009583
AMCG00009585 mRNA upstream 190038 42085281 ~ 42102235 (-) True AMCG00009585
AMCG00009584 mRNA upstream 248349 42143592 ~ 42162603 (-) True AMCG00009584
AMCG00009590 mRNA upstream 331652 42226895 ~ 42229779 (-) True AMCG00009590
TU71924 other downstream 1725955 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3045862 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3300606 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4663350 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6010829 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 773884 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1587178 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 2094268 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2613010 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2646651 44541894 ~ 44542809 (-) True G58584

Expression Profile