RNA id: AMCG00009578


Basic Information

Item Value
RNA id AMCG00009578
length 2061
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00009578
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42036018 ~ 42042211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGAAGGCGGGCCTTGTCAGTCACTGCTAACGAAGATGGCGGGTGGTTTGAAAGAGAAACAACTTTCTCAGAGAGTTTACGAGTCTTTGCAGCGGCTCAGATGCCCGCTGCTCGAAGGCCTGTTCCTGAGGGAAGCGGAGAGCATGCAGGAGCTGCTCTGCACCCCCTCTTTACACCGCATGGATATTCTCAAGTGGATCTGCATGAGTGTATGTCCGTCACTGAGTAAAAAAATCCTGGTTCTTGCTTCGACACAGACAGACGCTCTAATCCAAGAAATGGCAAAGCTGGGGTTTGAGATGATGCTGTGTCGACCAGATGACACCGATTTGATCAAGGGCTCGGCCACGCCCCTCCGCCAGCTTGTTTTCTTGGACCAGCTCCTCACTTTAGTCCCTGGTCCGCAGGCCGAGAAGGCCTCTGGgaactcctcctcctcctcatcttctGTGGGAGATCTGTCCCTCTCTGAAGAGGTGACCAGGACCGAGGAGCTGCTGGGGGAGCTACTGTCCAGCCCACACCTCCCCGATCTCATCCACCCCAGCTGCAGCCCCTGGCCGGCAGACATCCGTGAGCTGCTTCTCAAGAGAGAGCCGGCTGGCAAAACGCATCGAACTGCGTCAGGCAAAGCAAAGGAGCATTCCCTGAAGGAGGCCTCTGCccttttggaaaaaacaaactctgTCCTCAGTGAAATTTACTCAGAGtgTGAGTTCCTGAAGGCTGGCCCTCACTCCAGCGGTAGCGGAGGCCCCAGTGTGTCGGCACAGTCCCTCAGAATCGCCCTCTCCGATCTCGCCCAGCTCATGTCGGCATTCGGCCAAGTGTACGCTACAGATTTCCGAGACTACTGCAACAGAGAGCCGCCGCAGCTCAGCGTCAACGCGCAGGTGTTTCAGACCACGCACCAGCTACTGCACGCCTGCAGCCAGGAATTGCAGGCTTTGCAGCACGTCTCGGAAACGTCAAGAACGGTGATCAAAACCGTGGAACAGCGACAGCAGGCCAGGCAGTTCTGGAGCAAAGGGGAGATGCGCTCCTTACCGACAAAAGTGGCAGAGCTGAAGAGAAAGTACAGAGAGTTTTTGGCTGTGTATCGGCAGTAAAACTATGCGGTGgacagaatacatttggagaAGCCCTTGCCTGGGAGGAGGAGTCTGCTGCACTCGGACTGATCGTTGACAGCCAATGGGTTATACTGAGATGGTGGAAACTTCACTGGGATATGTTCTTCATGCATCAGCTCTCAGTATTATTCAGATGTTCTTTATGAGATCAGTACTGTTTTTAACCACACAACTATTTTCCTGCActgcagtctctctctgtctctatctagATGTCCTGTACATCAATATTTGGTTTTAGAATCCTTTGCAGATTAGGGTTATGGCACAGTTGTACCTTAagggagaaaatgtatttctcactCCAAAAGGAAATGTCTTCCATTTGCTTATGTATTTCACACTTGGCAGTCATTTCTCTTGCCTTGAAATTGTTGTAAATTGTTTGACTCCTCTACTTAGATTTTTATCACAAATAAACTGTACAGTTTGTCATGAGCTGCATTTGATGAGTACTCGAGGTTATGAATACAAGATGCAAGAATGTGGTCTCGGGACAAAAGGAAGTTTTATTTCtactgaaatgtgtaatttaaattgttatacaAAAGGTTGGTGGTTTCTTATGTAAGCATATCTCACATTCAGTAATTACACTTTTGCACACGATTTTAGGTTGATCTTAATCAAGTTGAAAGGAATGACAAACTGAAATGTCTACAGAGCTGGAAAACCTGCCTGAGATTATGGAGAACAAATCTCTCTGGCATCTAAGGCATGCAGTATATGTTTTGAAGAGGAAAAGACAGACAACACTTTGAGAATTTAGCATCATTTTAGGTAAGAGATGGTAAGGGAGTACCATATAcattgaacaaaaatataaatgtttcatgagctgaaataaaacACCCTAGAAATTGTCTATAAGCACACAAAGTTTATTTCTCAataattttgtgcacaaatgtgttgacatccctgtta

Function

GO: NA

KEGG:

id description
K16590 HAUS7, UIP1; HAUS augmin-like complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72251 lncRNA upstream 196552 41839165 ~ 41839466 (+) True G57792
TU72233 lncRNA upstream 218223 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 285874 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 436896 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 535800 41499964 ~ 41500218 (+) True G57690
TU72317 lncRNA downstream 43068 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 360024 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 373379 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 375930 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 376379 42418590 ~ 42420823 (+) True G57947
AMCG00009579 mRNA upstream 6054 41979537 ~ 42029964 (+) True AMCG00009579
AMCG00009577 mRNA upstream 75109 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009575 mRNA upstream 125900 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009569 mRNA upstream 191561 41832871 ~ 41844457 (+) True AMCG00009569
AMCG00009568 mRNA upstream 251481 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009581 mRNA downstream 33267 42075478 ~ 42078291 (+) True AMCG00009581
AMCG00009580 mRNA downstream 128135 42170346 ~ 42175700 (+) True AMCG00009580
AMCG00009588 mRNA downstream 151083 42193294 ~ 42211548 (+) True AMCG00009588
AMCG00009587 mRNA downstream 171393 42213604 ~ 42224519 (+) True AMCG00009587
AMCG00009586 mRNA downstream 224611 42266822 ~ 42271197 (+) True AMCG00009586
TU72035 other upstream 1041359 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1931070 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2086818 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2599023 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3578426 38442255 ~ 38457592 (+) True G57105
TU72919 other downstream 1890741 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2344286 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2525154 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2542351 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2590539 44632750 ~ 44651967 (+) True G58600

Expression Profile