RNA id: AMCG00009579


Basic Information

Item Value
RNA id AMCG00009579
length 3741
RNA type mRNA
GC content 0.58
exon number 23
gene id AMCG00009579
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41979537 ~ 42029964 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAAGGTGGTGCCAGGAAGAGACCAAGGTTGGCGCGGCTTCCAGGCTGGTACCATCTGCGCCCAGCGCCAGGCTAGGGAAGGTCTCTCGGACAACCCAGCCGACCTTGACAAGAGGAGGCAAGTCTATGGCCAGAACTTCATCCCACCCAAGAAGGCCAAGACGTTTTTGCAGTTAGTATGGGAAGCCTTGCAAGATGTGACCCTCATCATCCTAGAGATCGCAGCCATCATTTCCTTGGGTCTCTCCTTCTACCAGCCGCCGGGAGAGGAGAGCGAAGGTTGTGGGAACGTGTCGGCGGGGGCGGAGGACGACGGCGAGGCGGAGGCGGGCTGGATCGAGGGGGCGGCCATCCTGCTGTCAGTGATCTGCGTGGTGCTGGTGACGGCCTTCAACGACTGGAGCAAAGAGAAGCAGTTCCGCGGGCTGCAGAGCCGCATCGAGCAGGAGCAGAAGTTCACCGTGATCCGGAACAGCAACGTGATCCAGATCCCCGTAGCCGAGATGGTGGTGGGAGACATCGCCCAGGTGAAATATGGCGACCTTCTCCCTGCTGACGGAATTCTGATCCAAGGCAACGACCTGAAGATCGATGAGAGCTCTCTCACCGGAGAGTCCGACCACGTGCGCAAGTCTGCGGAGAAAGACCCCATGCTTCTGTCTGGCACGCATGTGATGGAGGGCTCTGGCAGGATGGTCGTGACCGCTGTGGGTGTAAACTCCCAGACTGGGATCATCTTCACTCTGCTGGGAGCCGGAGAGGgcgaggaggagaagaaagacaaGAAAGgcaAGCAGCAGGATGGAGCtgtggaaaacaatcaaaacaaagCCAAGAAGCAGGACGGGGCGGTTGCAATGGAGATGCAGCCCCTGAAGAGTGCGGAAGGGGGCGaggtggaggagaaggagaagaagaaggccAACGTGCCCAAGAAGGAGAAGTCCGTCCTACAGGGCAAGCTCACCAAGCTGGCCgccTGGTCATTGATCATCCTGGTGCTGTATTTCGTGATCGAGACCTTCGTGATTGAGGGCCGGATCTGGCTGACAGAGTGCACCCCGGTCTACGTGCAGTACTTCGTCAAGTTCTTCATCATCGGCGTGACGGTGTTGGTGGTGGCTGTCCCCGAGGGGTTGCCCCTGGCCGTCACCATCTCTCTGGCCTACTCGGTCAAGAAAATGATGAAGGACAACAATCTGGTCCGTCACCTGGATGCCTGTGAGACTATGGGCAATGCCACGGCAATCTGCTCTGACAAGACGGGCACGCTGACCACCAACCGCATGACGGTGGTCCAGGCCTACATTGGAGACAATCACTTCAAGGAGGTCCCCGATGCCAGCGCAATTAACCCCAAGAACCTTGAGTATCTCGTCAGTGCCATCGCGGTCAACAGCGCTTACACCTCAAAGATCCTGCCCCCAGAGAAGGAAGGAGGCTTGCCGAAGCAGGTGGGCAATAAGACTGAGTGTGGCCTCCTGGGTTTCGTGCTGGATCTGAAGAGGGACTACCAGACTGTGAGGGAGCAGATCCCTGAAGAGAAGCTCTATAAGGTCTACACCTTCAACTCCGTCCGCAAGTCCATGAGCACGGTGGTCCAGTTGCCCGACGGCAGCTTCCGGCTCTACAGCAAAGGGGCTTCCGAGATCCTGCTCAAAAAGTGTACCTCCATTCTGAGTGACAGCGGAGAAACGCGCAATTTCCGCCCCCGCGACCGAGACGAGATGGTGAAGAAGGTGATCGAACCCATGGCCTGCGAAGGCCTGCGCACCATCTGCATTGCCTACCGTGACTTCTCCGGCACCCCCGAGCCAGACTGGGAAAACGAGAATGACATCGTCGGCGAGTTGACCTGCATCGCAGTGGTGCCCGACGCGATCAAGAAGTGCCAGCGCGCTGGAATCACAGTGCGCATGGTGACCGGGGACAACATCAACACGGCCCGCGCCATCGCCGCCAAGTGTGGGATCATCCAGGCCGGGGAGGACTTCCTGTGTATAGACGGCAAGGAGTTCAACCGGCGAATCAGGAACGAGAAAGGAGAGATTGAACAAGAACGGATCGATAAGATTTGGCCCAAGCTGCGAGTCCTCGCTCGATCCTCCCCCACCGACAAGCACACCCTCGTTAAAGGTATTATTGACAGTACTATTGTGGAGCAACGCCAGGTCGTGGCAGTAACTGGTGACGGGACTAACGATGGACCAGCTCTGAAGAAGGCAGATGGAATCGCTGGCACTGACGTAGCCAAGGAGGCCTCTGACATCATCCTGACTGATGACAACTTCTCCAGCATCGTGAAGGCCGTGATGTGGGGCCGTAACGTCTACGACAGCATCTCCAAGTTCCTGCAGTTCCAGCTGACGGTCAATGTGGTGGCTGTGATTGTGGCCTTCACTGGCGCCTGCATCACACAGGACTCTCCCCTGAAGGCCGTCCAGATGTTGTGGGTGAACCTCATCATGGACACCTTCGCTTCTCTGGCTCTGGCCACGGAGCCGCCCACCGAGGCCCTCTTGCTACGGAAGCCCTATGGCCGCAACAAGCCCCTGATCTCCCGCACCATGATGAAGAACATCCTGGGCCACGGAGCCTACCAGCTCACCATCATCTTCACTCTGCTCTTTGTGGGAGAGAAGATCTTTGACATCGATAGCGGCCGCAATGCCCCCCTGCACTCCCCACCCTCGGAGCACTACACCATCATATTCAACACCTTCGTCCTGATGCAGCTCTTTAACGAGATCAATGCACGCAAGATCCACGGCGAGAGGAACGTTTTCGAGGGCATCTTCTCCAACCCCATCTTCTGCAGTATTGTCCTGGGCACTTTCGGGGTACAGATTGTAATCATCCAGTTTGGGGGAAAGCCATTCAGCTGCGCCCCTCTCAACATCGAGCAGTGGCTGTGGTGCCTGTTCGTGGGTGTGGGGGAGCTGCTCTGGGGACAGtttattgccACGGTGCCAACCAGCCACCTCAAATGCCTGAAAGAGGCGGGCCACGGGCCGGGCAAGGACGAGATCACGGACGAAGAGATGGCCGAGGACGAGGAGGAGATCGATCACGCCGAGAGGGAGCTGAGACGCGGGCAGATCCTGTGGTTCCGTGGCCTCAATCGCATCCAGACCCAGATGGAGGTAGTGAGTACCTTCAAGAGAAGTGGTTCGTTTCAGGGTGCAGTCCGCCGGCGCTCCTCCCTTCTCAGCCAGCTCCACGATGTAACCAATATTTCTACCCCCACTCACATCCGAGTGGTGAAAGCCTTCCGTAGCTCCCTCTACGACGGGCTGGAGAAACCAGAATCCAGGAACTCCATCCACAACTTCATGGCCCACCCTGAGTTCATCATCAACGACTACATCCACAACATCCCCCTGATCGACGACACCGACATCGACGAGGAGTCGGAACTGGCCTCCAAGCACAACCACATCCAGCTCGCCTTGCACCCCCCGCCGCCGCCCCTCACCCAGCCCCCCGCCTCGCTGCACCACGCCCAGCCCCgcacccaccaccaccaccaccccccccgcccctaCCGCCAGTACAGCCTCCCCGCCTCCCCCAACCGCAACAACAACGCCATCGACAGCGGCATCTACTTGACCCCCACGGACGCCACCAAACTGGAAAAGCAAAACCTGAATGGAGGCAAGGAGGTAAAGCCAGAGACTATGTTCTACGGAGTACTCTTGATTTCCTTCTTTTCTGAGGAAATACGGATAGACTCA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72251 lncRNA upstream 140071 41839165 ~ 41839466 (+) True G57792
TU72233 lncRNA upstream 161742 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 229393 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 380415 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 479319 41499964 ~ 41500218 (+) True G57690
TU72317 lncRNA downstream 55315 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 372271 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 385626 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 388177 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 388626 42418590 ~ 42420823 (+) True G57947
AMCG00009577 mRNA upstream 18628 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009575 mRNA upstream 69419 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009569 mRNA upstream 135080 41832871 ~ 41844457 (+) True AMCG00009569
AMCG00009568 mRNA upstream 195000 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009564 mRNA upstream 295842 41678552 ~ 41683695 (+) True AMCG00009564
AMCG00009578 mRNA downstream 6054 42036018 ~ 42042211 (+) True AMCG00009578
AMCG00009581 mRNA downstream 45514 42075478 ~ 42078291 (+) True AMCG00009581
AMCG00009580 mRNA downstream 140382 42170346 ~ 42175700 (+) True AMCG00009580
AMCG00009588 mRNA downstream 163330 42193294 ~ 42211548 (+) True AMCG00009588
AMCG00009587 mRNA downstream 183640 42213604 ~ 42224519 (+) True AMCG00009587
TU72035 other upstream 984878 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1874589 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2030337 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2542542 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3521945 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 6054 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 1902988 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2356533 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2537401 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2554598 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044018 False 4576 mRNA 0.51 21 NC_007134.7 19838130 ~ 19933625 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_06116623_06143372.mRNA True 4914 mRNA 0.50 23 CI01000010 6116524 ~ 6144062 (+)