RNA id: AMCG00009583


Basic Information

Item Value
RNA id AMCG00009583
length 2393
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00009583
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42073910 ~ 42082769 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAATACTCCATCCCGGCAAATGGCTTCGGGAATAAATGAGACCATTGAGACAGCATCACTTGGCAGACCTTTCCAGTTAGGCATGTTATACGACTGCCGAACAGAAACCCTTATTCCAGacaCCACATTGTGGAGTACCAAAACAGTAACTGAGAGCAGACAGGTTAAATCACAGATTAATACAGAGTACCAGGTCTTCGTCACAGATTCCAATAAGCACAATGTCTCTGCGCTAAAGGTGAATTCCTCACTTAAAGCAAGTCTGCTGGCAGGGCTTGTAGAAGTAGGTGGAGCTGCCAAGTACTTCAATGACAGGACGAAATCCAACAACCAGGTCAGAGTCACTCTGAAGTACTACACCACAACCAGATATGAACAACTCAACATGACCGACTTGGCAAAAAGAAAAGTGTCCAGCCCGCGTGTGTTTAAGGAAGGTACAGCGACCCATGTGGTCACTGCGGTGCTGTATGGAGCGGAGGCCTACTGTGTTTTTGGCAGAGAGGTGTCTGCAGAGGAGAACAAAAAAGACGTGGAGGGAGAACTGAAACTCGCTTTAGACGAGTTGAAGTACGATACAATCAAGACAGTTTTTTCCGTGAAAAGGAATCGAGAAGGGAAGTCTACCGTCAAGAATTTCAGCTGTATATTTTATGGGGATCTTCAGATGTCTGAAAATCCGTTCACTTTCGACGAAGCCATCAAAGTTTACAGTAAACTCCCACAACTGCTTGGAAAAGATGGAGAAAAAGCGGTGCCTGTGAAGGCCTGGCTTTACCCTCTGGCAAAGCTGAACTCAAATGCTGCGAGGCTCATAAGACAGATAAGTGATAGTTGTGTTCAGTATTTCCAGAGGGCTATAGAGAAGCTGGACGaagttgaaattaaatgtaacgaCCTGTTGAATGACCCTGTCGCAAAGACGTTACCTCTTTTCAAAGGCCATATTCAAACTCTGAAGGAAGTGACAGACCAGTACAAAGTGTTTTTCAGTAAACAAATTGCGGACATTCTGCCATCCATCCGTGGTGGTCAAAGAGAGGAGGAAGACATTAAAGATGTTTTATCACAAAATGATGGGTCTCCTTTTAACCCACAGAGGATCAATCAGTGgataaagaagaaagaaacaaacatgaacACTGTAAGAGGCTTCCTCACTACACTGCAAACCAGTGAGATCGAGATCATGTCTCCAGAGAAAATAGAACAGGAGAGATCTAACCCCAATGTTGAGATGGTGGTTTGCTTTACATTCACCTCCCTCCATCCGCCTGAGCCGTACCTGTTGGATCTGTACAGATACCTTAATGCTGAAAATAATGCCAGGTTTACATCTCAACTTCCTCCACTTTCTCCTATTCCACAGGACGCCACAGACTGCATGAACATAGGTTCCATAAAGGAGATAAAGGGGTGCTTTAAGGTGTTTCTCGATTTAGTGGAAATCCATAAGGAGAAGAAAGGAATAACATTCTGTGCTACTGACAAATCAGATAATAAATATCCAGGAGCGTGCATATTCCTCTATAAAAGTGAACGTGCTGAATGCCTTTACCATCAGCTGCCGCCAAAACCCGAAGTGATCAATCTGCAACACGATAGCATGACGGTTAAGATCTCCTTTCAAAATAGCGTGATAACTGGAGGCAAGGTGGagtataaaacacagaaaaaggaaaactggGAGTCTCTTGCTGTCACAGGCATAGAGGACACAGTGACTGTGTCAGGGCTGCAGCCAAACACGGAGTATGAGCTCAGGTCCACAGCACAGGGCAAGCTGGGCTACACTGTGAGCAGCGACATCACCGGCATAACAACACTTCCAACAAGTGCACCCAGACAACTTTCAGCTCTCCAGTCATCTCCCAATTCCATAACTATAAGATGGAAAAAACCCTCCTCTCTTGGCAAGGGGGTCAGTATAAATCATTACATCATTGAGTACAAAGTGAAAGAGAATCCTGAAAGGAGCTGGATGCAAATGATAGTGGAGAAGGAACAATGCACAATTACTTCACATCATCTAACAGagaacacactgtacaacatCCGAGTTTGTTGCAACTGCGGAGCCCTGGGGACCAGCAAGTCGAGTGAACTCACGGATGTCTGCCGGCCAGGGGCTTTAGCTGGTGTGGATGAGATCGGGGAGttaTACATTAACAGCTATCGTTCTTACACagaagatgaggaggaggaggagttcCCAGAGGCCTTCTCGGCCTGCGGACCAGGGACTAAAATTTTCTTTGGCCAAGTGATCCATATGTCATATCTGACTCCAGCCATGGACTTGCAAGAAAGTGAGACCGTAGAGACAGCAGCTCTGGGCCGACCCTTCCAACTGGGCATGCTGTACGACTGCCACAGGGACGCTCTTATCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72308 lncRNA downstream 17782 42041199 ~ 42056128 (-) False AMCG00009582
TU72239 lncRNA downstream 258103 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 1140700 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1296826 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1730431 40339347 ~ 40343479 (-) True G57545
TU72332 lncRNA upstream 90489 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 122501 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 385416 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 394952 42477721 ~ 42478112 (-) True G57988
TU72510 lncRNA upstream 456670 42539439 ~ 42540113 (-) True G57998
AMCG00009582 mRNA downstream 18869 42043496 ~ 42055041 (-) True AMCG00009582
AMCG00009576 mRNA downstream 178667 41883426 ~ 41895243 (-) True AMCG00009576
AMCG00009574 mRNA downstream 199320 41867541 ~ 41874590 (-) True AMCG00009574
AMCG00009573 mRNA downstream 210581 41850138 ~ 41863329 (-) True AMCG00009573
AMCG00009570 mRNA downstream 224273 41845020 ~ 41849637 (-) True AMCG00009570
AMCG00009585 mRNA upstream 2512 42085281 ~ 42102235 (-) True AMCG00009585
AMCG00009584 mRNA upstream 60823 42143592 ~ 42162603 (-) True AMCG00009584
AMCG00009590 mRNA upstream 144126 42226895 ~ 42229779 (-) True AMCG00009590
AMCG00009589 mRNA upstream 160619 42243388 ~ 42254102 (-) True AMCG00009589
AMCG00009592 mRNA upstream 244100 42326869 ~ 42334548 (-) True AMCG00009592
TU71924 other downstream 1916439 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3236346 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3491090 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4853834 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6201313 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 586358 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1399652 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1906742 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2425484 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2459125 44541894 ~ 44542809 (-) True G58584

Expression Profile