RNA id: AMCG00009584


Basic Information

Item Value
RNA id AMCG00009584
length 2863
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00009584
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42143592 ~ 42162603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGAATAATTTAAGAGCCAGTGCTGAGTCTGCCTGCTTTAGGAGTGGAGACACAgtcagatgagagagagagtgtgaagtATGCCTGCGTTTCTGCTTTGCGTTTGCGTTGCCCTGATGTCCCAGGAGAGCTGGGCCCGGCCCGGGAAGACGCCGAGAATCTTACGCAACCCAGCACCGGCCGCCCTGGCCACGGCGCCGCCAATCACCTTGCCTGGTCATGGCGGGCTCGACTTTTCTGataGCAGCTACTGTCTTGTGAACGGAATAACAATGTTCGAAGGAGCGGTGTGGGCCCCCGGACCCtgctctgtgtgtatctgtgacCGAGGGAAAGTCAGCTGTGACAGAATCCCTTGCAGAACGACAGATCCTGTTCTACCAGCCCAGAAAGACAATAATCCGGGTGCAGAGGTAATGAAAGTGACACCAAAGCCAGAAGCAGCCAAGAACAAGATCAAGAGCAAACCAAAACCAGACAAAACCAACAAGCTCCAGCAAGCTACCAGTTCCCCCAAACAGGACACGAGCAAGAAAGCTCAGGAGGTTAAGACCAAGAAGGTAGAGATCATCTCCACTACAAGAAAAGAGGTGGCTTCTGGGAAACAGGAATTTATTCCAGAAAAGAAACAGGATGTGGTGCAGAAGCCTGAAGGGAAAGGTGTGAAACCCACAAAGGAAAAAGTAGGTGGCGGGGGAGGGGGTAGCGTGacagacataaaaaaaagtCCAGTGCGGCCAACTGTCACCAAGGCACCCTATGTTAGAAGCAGGCACCAACTCATCACCTTTGACGATTTTGACGACAACATCGATAGCCATGATCTGGAAGATTTATTCTTAGGACGCCCCTTCCCTGGAGATCGCCTGCATCCCAATATCATGGAGTCTCTCCCCATCGGCTGCCTGCTGTCAGAGTCCGCCATCGCTTGTGGCAACTCCAGGATGAGACACGTGCCCATTCTGACTGACCTGGGCATCACGACACTGTATCTGGCAGAGAATGAAATTGCCAAAATCCCTCCGCGGACATTTGCAGGACTGCCCAACCTGGAGTGGCTGGACCTCAGCAAGAACCGTCTGGACGATTCCTCTCTGTACCCTGACATATTCCGGAACCTCACCAAGCTGAAGAGGCTAAACCTGGATGGGAATCACATAACCAAGATCCCACCGCTGCCACCATCACTGGAGGAGCTCAAGATGAATGACAATAAGATTAGTGGCTTGACTCCACAAAGCTTCAAAGGTCTCTTTAAGCTACTGACATTGGAGCTGGAGGGAAATGGTTTTCATGACGGCAATGAGCTACACATGGATGAAAATCACATTGAGGAGATCCATGAAGGCGTTTTGAACAAGACCGTCAACCTGAAGGTTCTGGATTTGAGCAACAATCGCATTCAAGAGAACCGCATCGCCCCACGGGCCTGGATCCACCTGCAGCAACTGGAATCCATCGACCTGTCCTACAACAGGCTCGTGCACGTGCCCTCCTTCCTGCCCATGGGCTTAAGACAGCTCATCCTGCACCACAACCAGATCGAGAGGATCCCGGGCTACGTTTTCGCCCATTTGCGACCCGGCCTGGAATTCCTGCACCTGTCCCACAACCACCTACGGGACGATGGGATCCACGGAGTCTCCTTCCTGGGCCTCTACCGCTCCCTGACAGAACTGCTGCTGGACAACAACCACTTACGTGCCATTCCCCGTGGGCTCCTCAACCTCAGATTCCTGCAGGTCCTCCGTCTCAACGACAACCACATCAGGTATGTGCCTCTCAACTCCATCTGTGACACCCGAGTCATGGAGGATTCCCCCCTTATCTCTATCCATCTGGAGAACAACCTGATCGACCGCCGCCTCATCCCACCCACTGCCTTCTCCTGCATCAGATCCTACCACAGCATCATCCTGCGTCCTCAAAGCTATGAGGAATAGATCTTGCATCTCCCCCCCTTTCATCCatccacctccctctctccctctgtccctgtccTTCCGTCTTACACTGCAGTCTCAGAGGAGGCACGACTTGGAGACACGTCTCATTTGTCTCCTGAAAACCTCAGACACACCCCATCTGCCCCCATCTCCGCCCCCTACTTTGGTTATATTTGCTTTCTAACCGTTAATTTCAAAATTCTCCATTCTCGCCTCCTCTAAAGAAAGTCAGTGCTTAACACAGGAATAAGACAGGATATCTgtcatattttaaactaattttcATTTCAGGTTTTACAGATAAAGACCGTCTTTTTCtctcacaaatacacacaacctTGTTTCTTGTTCCTGAGTCAGCTACAGCAGGATATgctattgcttttctttttttccatttcctttaaaagaaaaatgttattatttcccctctatatttaattaattgcctGTCTGCTCCGTGTCTgcagttttgtgtgtttttgtgtaatcCTCTCCACCCAGTCGTGTTTGTTCAGGGTGATTCTGTTTGCCGTTTGTCTTGATTCAACAGACCTACGCATTCCACTTCAAAGTGAAAGCCAAGCATGGGTTGTTGGGAGACAGATTAGTAAAGCACTTTCTGAAGACAAACCGAATTCAGGTTTATTTTGGTAAACTTACTGTAGGATTTTTacataatattgttaatatttatagttaaatgtgtttatagttTTCTATGAGTTCAGTTTGCCTTGTCTGTGATTTATTACACTGTACCACGAGTAATCCATCAGTACTATAGTAAACAAGCCCTGGAAGCATGTATTATTGTACATCACagaattcagtgtttttgtcaCCCTTATGATGCCATCAACTGTCATTGATCCTTCCCCTGTCTAATAAAGTTggctattaaaaatgaaaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72308 lncRNA downstream 87464 42041199 ~ 42056128 (-) False AMCG00009582
TU72239 lncRNA downstream 327785 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 1210382 40932965 ~ 40933210 (-) True G57600
TU72026 lncRNA downstream 1366508 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 1800113 40339347 ~ 40343479 (-) True G57545
TU72332 lncRNA upstream 10655 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 42667 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 305582 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 315118 42477721 ~ 42478112 (-) True G57988
TU72510 lncRNA upstream 376836 42539439 ~ 42540113 (-) True G57998
AMCG00009585 mRNA downstream 41357 42085281 ~ 42102235 (-) True AMCG00009585
AMCG00009583 mRNA downstream 60823 42073910 ~ 42082769 (-) True AMCG00009583
AMCG00009582 mRNA downstream 88551 42043496 ~ 42055041 (-) True AMCG00009582
AMCG00009576 mRNA downstream 248349 41883426 ~ 41895243 (-) True AMCG00009576
AMCG00009574 mRNA downstream 269002 41867541 ~ 41874590 (-) True AMCG00009574
AMCG00009590 mRNA upstream 64292 42226895 ~ 42229779 (-) True AMCG00009590
AMCG00009589 mRNA upstream 80785 42243388 ~ 42254102 (-) True AMCG00009589
AMCG00009592 mRNA upstream 164266 42326869 ~ 42334548 (-) True AMCG00009592
AMCG00009599 mRNA upstream 262325 42424928 ~ 42429586 (-) True AMCG00009599
AMCG00009598 mRNA upstream 267000 42429603 ~ 42429987 (-) True AMCG00009598
TU71924 other downstream 1986121 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3306028 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3560772 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 4923516 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6270995 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 506524 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1319818 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1826908 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2345650 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2379291 44541894 ~ 44542809 (-) True G58584

Expression Profile