RNA id: AMCG00009587


Basic Information

Item Value
RNA id AMCG00009587
length 4158
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00009587
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42213604 ~ 42224519 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCAACATGGCGCTCCTCGGAGCGGACTGTCTGTGAAGCGGGGCAGCGGAGCAGGTTAGGGGGGGTGGTCatcaatatttactttaatttccaAGTCATTTATCCGGTGAAACTACAGGATATTTAAATCACGGATGAGAAGGCGGACGGGCTTTCACACCCCCTTTCTTCCCAGTGGAGTATTTTACAACCTGCGGCCTAGCATCCTGCCTGCGGAGCCTCGGTCTCGGGTTGGAAACCGAAGCGGGCGATCAGGtAAGATGCTGTGTCTGGGACGCTCTCTGGACTCTCCCTGCACTCTGGCCCTGCTTGTGGGTTTCCAGTTCGCCTTTGTGGTTTACTTCTCTCTGGGGGGGTTCAAAGGCCTGGTTTCGGTCCTCGTCCGCTCCGCTGACCCCGAATTTGACTATTCCAAACCTCACGACGTCTACACCAATCTCAGCCAGCTGGGGGCGCCACTGATCCACCCGGAGACCACTGGGGCCACGGCGTTAGCATCAGGCAGGGAGCACCTGAAAGACTGCCCAGACCCCTCACCTCTCTTGGTGGGACCTGTAGCCGTGCTGCTCTCGTCGTCCTTCTCTCTCGACCAGATCCGGGATCGCAACCCCCTGGTTCTGCCGGGTGGCCGCTACCTCCCCCCGGATTGTGAGCCCAGGCATCACACCGCCGTCATCATCCCCTACCGCAACAGGCAGGCCCACCTTCGCGCCCTACTCTACCACCTGCACCCCTTCCTGCAGAGGCAACAGCTCCACTATGGCATCTACATCGTGCACCAGatgggAAACTCTACCTTTAACCGGGCCAAGCTGCTCAATGTGGGGGTGAAGGAGGCTCTGAAAGACGGGGAGTGGCAGTGTCTGTTTCTGCATGATGTGGATCTGCTGCCCGAGAACGACCACAACCTATATGTGTGTGACCCCAAGTCGCCCAAGCATGTCTCTGTGGCCATGGACAAGTTCAGATACAGATTGCCTTATCCCCAGTATTTCGGGGGTGTGTCGGCCCTGACTCCTGACCAGTACATGAAGATGAATGGCTTTCCCAACCAGTactggggctgggggggggaggACGATGACATTGCTGCTagAGTGCGATTGTCTGGAATGAAGATCACGCGCCCCTCTGTGGCAGTGGGCCACTATAAGATGATCAAGCACAGGGGAGACCGGGGGAATGAGGAGAACCCACGCAGATTTGACTTGCTGATACGAACCAGGAGTAACTGGAAGTCTGACGGCCTGAACTCTCTGACTTACGAGCTCTTGTCCAAGGAGCTGGAGCCGCTCTATACCAACCTGTCGGTCCACATAGGCGAAGACCCCCGGAAACCACAGAAGACCCACCCGCCCTACAAATCTCCCGAAGGCTCGCAAAAAAAGCAGACGCCCCCCAAGGCGCCCGGATCCACCGACCTACAGAAAACCCAAAAGGCCAAGAAAGACGCGGCAGGTGGGCTTGGAAGGGAAAGGGGTGGATCTGTATCGGAAGGGCAAGGGGGTAGTCATCAAGACGGTGGGGTCCGGAAGGCCAATGAGACCCGAGGTGTGGCTTTACCGGGCAGGCTCGGCAATCACTCGTTCGGGGTACCGGCACAGGAAGGCGGGGTTAAGAATGTGTCGGCTCAGGTGACATAAAGGAGGACACGCCCCCCACCGCTGCCATTGGCCACAGACTGTCCTCAGCCACTGTTGCCCGTTCGCCAAGTCGTCGCTGGTTCTGCACACAGATCATTCTCTGGGAACCTGCCGATTTGCCGAAACGAAagtgaaaaatgctgtacaCTACGATTCCCCTCCTTGTTTCTGTGCCttttgtgttgtcattttctctctctctctcttttcgtTGGGACACCCTCGCCGATCTCTTGCTGGGTTTGCAGATGCGGGAGGCTGTTTCTTTCAGTTGAATCTGCTGTGCCGTATGCTTGTGCGTGCGCTGGTGTGACTGCGTTCGACTTTCATGAGGTGAACTGTGACAATGGAGGGAGTCGCCCtttctagttttttttgttttgttattgttgttgtgaaaCATtgccattaatttaaatttctaTTGACATTTAGTCATTTGTGTATAGACACGATAATCAACAAactaacaacaaagaaaaattgCAATCCATTTTGTTGTAAAAATTGTTAGAAAACAGAAAGCAGAGCAGTTATTAATGGGATATGCAAAACGGTTTCCTTATCTATGTATATCCCATAACGAATCATACTGAcaatcagacttttttttttttaaggtttattaAACAATCGCCTGTTTCAGACCATTGCGAATGCATCAAACTTAATGCTTGGAGATTGACAGGACGTTGTATTTCGTGCACTTATTCTAACTGTGCTTTTGTTACATTGGAAAATGTCCACCATTCCCTAGTTGACACATCACCAGCTACGAAACTACTGTAGAGGGTTTGTTGTTGCACGGCACACCTACTGTTCTCTTTCACGCTAGCATCCTCTACCAACCTGCACTCGGTGTCAAGTGGGTCGGATGTGGGCTATCGCACTACAGTTTCTGTTAGCAGGTTAGAGCAGCGGTCTCTGATGGAAGTTCATTGTGCATCTCGCTCGACCCGGGTCGGTGCCGGTTAACCCACTTCCTGAGATGGACCCGGGTCAAGCTGCTTCCCGCAGGTATCTGCCTGCACGCTAACGAAAATCATAACCTGCCTCATAAGAAGACATTGATGCACATCTGTAATATGACTAGTACTCTCAGTTTTACCATAGTCTTCTGAAAGATCAGTGTGAAGTCAAGCAAGTGGAACCAATTTCGGAAGATCTCGCATCCCCGGGACTGAAGTTCGATACCCCTGGATAGTTGTAGTGTTGGCAATCTAAGTCTGTAATAGCTGATTGCTTTGAAGTTTTGCAATTCAGCCTCACCTGACTGATGTCCCTTTTGACAGGCTGAACAATGCTTTAACCAAACGTTTTTTAAACTGCAAGTCACCTTTCCAACGTGTTGCATCCCTCTTCATTCTAAAGCATCAGAACACGATTGCCTTCGACTGTCAGATTTCCAGACGTGGAAGATGTGATAGTATTTGATCATTAATTAATCCGACTCCTACCATCCACAGTTTGACAGCACTTGTTTTAGCGTGCTAGGATATTGAGAAATTATACTTGTATTAAACGGGAGACTGGATTGTGTTATATTTTTCTTGATATGGTTTGttgtatctttttgttttcttgttctgCACTACAAATTCATTGTTTTGTAAGAATCtgttcaaaaaaagaaaaacttgctAAAGCTCTAGGTGCCTCTTAATAGAATCGATCGCTCTCCTGCAGTTTCCTCATTCTTAGTTCTGTCCTGTTTCCCCTGCAGTGTGACTCCAGGCGTTGTGCTGGCGAGGCTGAGTGTGCTTGGTAGATTCGCAGTCTGTCGCTTTCCAATGGAGTCTGTTGTTGACTGTTAAGATCTTGATATGCGCTCGCTATGCAATTACTCTGCATACATgttgataatataataataataataataatgcaatttatatattCTAAATTCAACCTCATTCGTTCAAATTAGTAATCCATGCCATGAGCAGGCCTTTGAAAGTTGTTAGGTTAATGCTGCGCATCAGATATCGCATTTTGAAAAGTGCAAGTGCTCCTTGCTGTACAATGCTGCATGGATGTTGACCAAGATGAAGGATTTATGATTGGACGTAATGAGAGAACCACTGGAGCACCACGATCAAACAATCCGGTCGGTGCTGGGTTAAGATGACATGGCACAGTTCATGACGATGGCAAACGGAGATACAGAACGCACAGTTGGAGAGGTACAGAAACATATCTTTATCACCTTCTGTGTACCACTAGTGAATTGGCCTGAATCAAAGTGGCAATGGCGAAGGAAAACAAATAGCaggtccccccccacccaaaaaaaagcaattgaGAAGATGAAATTGCTAGGGAGTGATTGTgtagctgtgtttgtttgtgaaatctctatatttaatgaaataccTAGTTTTGTATCAACTACATGGGACGGGCTGCGATGGCACTCATCTCTGGAGTGTGAGAACAAGATCGTTTTTATCTGGAATATATCTCTGATGTGCACTGAAAGATGTATatgttattaataaatcatatttaaaggTG

Function

GO: NA

KEGG:

id description
K07968 B4GALT3; beta-1,4-galactosyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72317 lncRNA upstream 125459 42085279 ~ 42088145 (+) True G57843
TU72251 lncRNA upstream 374138 41839165 ~ 41839466 (+) True G57792
TU72233 lncRNA upstream 395809 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 463460 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 614482 41596229 ~ 41599122 (+) True AMCG00009563
TU72439 lncRNA downstream 177716 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 191071 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 193622 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 194071 42418590 ~ 42420823 (+) True G57947
TU72449 lncRNA downstream 203323 42427842 ~ 42428048 (+) True G57948
AMCG00009588 mRNA upstream 2056 42193294 ~ 42211548 (+) True AMCG00009588
AMCG00009580 mRNA upstream 37904 42170346 ~ 42175700 (+) True AMCG00009580
AMCG00009581 mRNA upstream 135313 42075478 ~ 42078291 (+) True AMCG00009581
AMCG00009578 mRNA upstream 171393 42036018 ~ 42042211 (+) True AMCG00009578
AMCG00009579 mRNA upstream 183640 41979537 ~ 42029964 (+) True AMCG00009579
AMCG00009586 mRNA downstream 42303 42266822 ~ 42271197 (+) True AMCG00009586
AMCG00009593 mRNA downstream 51480 42275999 ~ 42280429 (+) True AMCG00009593
AMCG00009591 mRNA downstream 65635 42290154 ~ 42298090 (+) True AMCG00009591
AMCG00009594 mRNA downstream 160980 42385499 ~ 42399331 (+) True AMCG00009594
AMCG00009600 mRNA downstream 189686 42414205 ~ 42415545 (+) True AMCG00009600
TU72303 other upstream 135363 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1218945 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2108656 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2264404 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2776609 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1708433 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2161978 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2342846 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2360043 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2408231 44632750 ~ 44651967 (+) True G58600

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044023 True 1233 mRNA 0.54 6 NC_007134.7 19985232 ~ 20002459 (-)