RNA id: AMCG00009589


Basic Information

Item Value
RNA id AMCG00009589
length 1488
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00009589
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42243388 ~ 42254102 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGCCGTGCCTGTTCTCTCCAAGAGCCCAGGAGAACACAAACCCAGTTCACATCTGCTTCTGTTGAGGAGCTTTCTGCTGTGGGATCTGCATCGGGAACTGACCCACAACATGATGTGCACACTGCTGCATGGAGGTGCCAGTGCACCAATAGAAGAGATGGAGAGTCCAGTTGAGTTGGTGGTCAACAATGAAGGGAAGTTATCCATCAAGCAGGAGGCTTTGAAGATCCTGTCTAGGATTGACAGAccagtggtggtggtggcggtgGCTGGGCCAGCCCGCTCTGGGAAATCCTACCTCATGAACCGCCTGGCTGGAAGGAAGAAAGGGTTTGAATTGGGTGCCACTGTTCAGTCTCTTACCAAGGGGATCTGGATGTGGTGTTTGAGACATCCCACCAAACCTAACAACACACTGGTCCTGTTGGACACAGAGGGCTTTGGAGATGCTGAGAAGGGAGATGAAGACAACGACCACTCCATCTTCACTCTGGCAATTCTTCTCAGCAGCATGTTTGTCTACAACAGCAAGGGGACCATTACCCAGCACTCACTACAAGATCTTCTGCGAGCCATTCGAAACTACTTCCCAACTCGCAATTGCTTTGGATTCGTTACTCCGACGGGAAGATCCAAGCTGAAGAAATTGCAGGAGCTAAACGACAGCGAGTTTGACCCTGAGTTTGTTGCGGAATTTGAAAAGTTCTCAAGTTACATCTACAGAATGGCTGAGACAAAGATAGTGGATGAGTCTTATAACGCCGTCCAGATCTTCCTGAGGCACTCCATGAAGGATGAACAGTACACCTACCTCTCCAAGCTCATGGTGGCCTTGGGAGACAAATATAAAGCCTTACATCATGCTGTTGAGAGTAAGTCAGAAGAGAGGTGCACCTCTGTCTTGGAGGAATTGCAGAGTGGCCTGAAAGAAAAGTTAGACTCTGCACACTACATCCGAGCAGGGGGATATGAAGAATTTACTGCTGACCTAGAAGATATTGTACGACAATACAACATACAGGTGGAGGGTGAAGTTCAGGCAAAAAAGGTTCTGGACAGATTTTTCTTTGACATGAAGGCTTATGCCaaggaaataaagaaagtgGACACCATTGTACAAGccaaagaaacagaaatgaGTGACTTCCTAAAGGGACAGCAAGAGGAAGCTAAAGAGAAAACGAGGAGACAAGAGGAAAAAGAGAAGGACGAGCAAATGAAGCGCTATGAAGAAACAATCAAACAGCTGAATGAGAAAATTGAAGAAATTAACCAGATGAAGTCCACCAAGGCTAGAGAAGTGCAGGAGAAGAAGACGAGTGAAATGGAAATTTACAAGAAAGAAGGAAGCAAAGAAGACAGCGAACGGAtgagacgagagagagagcattttgaagaaaaggaagagaaacGACGTAACTCGTGGTATGAGTCCTTCAAAGAGTTTGCAGTCTGGATTTATGATTGGttttttctgcattga

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72348 lncRNA downstream 37829 42205270 ~ 42205559 (-) True G57873
TU72332 lncRNA downstream 67681 42173258 ~ 42175707 (-) True G57858
TU72308 lncRNA downstream 187260 42041199 ~ 42056128 (-) False AMCG00009582
TU72239 lncRNA downstream 427581 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 1310178 40932965 ~ 40933210 (-) True G57600
TU72494 lncRNA upstream 214083 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 223619 42477721 ~ 42478112 (-) True G57988
TU72510 lncRNA upstream 285337 42539439 ~ 42540113 (-) True G57998
TU72547 lncRNA upstream 394748 42648850 ~ 42673707 (-) False G58025
TU72563 lncRNA upstream 442795 42696897 ~ 42697133 (-) True G58039
AMCG00009590 mRNA downstream 13609 42226895 ~ 42229779 (-) True AMCG00009590
AMCG00009584 mRNA downstream 80785 42143592 ~ 42162603 (-) True AMCG00009584
AMCG00009585 mRNA downstream 141153 42085281 ~ 42102235 (-) True AMCG00009585
AMCG00009583 mRNA downstream 160619 42073910 ~ 42082769 (-) True AMCG00009583
AMCG00009582 mRNA downstream 188347 42043496 ~ 42055041 (-) True AMCG00009582
AMCG00009592 mRNA upstream 72767 42326869 ~ 42334548 (-) True AMCG00009592
AMCG00009599 mRNA upstream 170826 42424928 ~ 42429586 (-) True AMCG00009599
AMCG00009598 mRNA upstream 175501 42429603 ~ 42429987 (-) True AMCG00009598
AMCG00009597 mRNA upstream 181133 42435235 ~ 42444068 (-) True AMCG00009597
AMCG00009596 mRNA upstream 220784 42474886 ~ 42475964 (-) True AMCG00009596
TU71924 other downstream 2085917 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3405824 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3660568 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5023312 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6370791 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 415025 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1228319 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1735409 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2254151 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2287792 44541894 ~ 44542809 (-) True G58584

Expression Profile