RNA id: AMCG00009599


Basic Information

Item Value
RNA id AMCG00009599
length 1224
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00009599
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42424928 ~ 42429586 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCAAGTGAAAAGCAATGAGAATCTGCTGGAGATGTGCCTGATCCCTCTCACCTGCTGTGTGGTTTGTAAATTTCTGAGCAGCAATGAGACACCTGGAGACTCAACCACATACATCTTTGTGAACTACATTTACATCCTTATGAAATGCCACTACACAAGCTCAGCAACCAAGGTTGGGCTGAGCTTTCGCAcagaggagctggagaaggcATTCGGAAACGTGCAATATTTGCCTGGTAACTGCATGAAAAGGACATTCCTTTACCAGCAGGAAGACCTAGCCACTCTCTATTTCGCCAGAGAGAATGAAAGCCAGTTGAAGCAGTTCCAGTCTAAGTGGCTTTGTGAGAACGGAATGCTTAGGGATGTCACCCATCCCTGCTTGAGGCTTCAACTGCAGGACTGGATGAGGATCGATGTTGAGCTTTCTGCCAAGAGGCTTGAAGATGGCTACCTTCTCCTGGACCTGatgctgtgtttgttcaagCAGCATTACGATCCATGCACCAGGCAGACCCTGGGGTTTTCAGGAGATCAGTCTGCAGTTCATAGAGATGAAGAAGTGGGACTTGATGGTCTTACGGTATTAGACGTCTGCTTCTCGGCACTGAATCTGGGAGACAACACACTGGGTGAGGAGCAGGTGGATGTCCTCTGTGAGGCCCTTGCCAATCCCAGCTGTCAGCTGAAGGAGCTCACGTACTATTTCAGCATTGTGTGCTTGGTTTCCCTGCAGGCTGGTCACGTGCAAGCTCAGTGGCAGAGGGTGGTAGCGAGCAGCAAAACTCTGACTGGTCTCCTGTTGGGGGGCAACAACCTATCAGAAAACTCCTCGATGGCACTAAAAAACCTATGGGACACTACTCTGAAAATCCAGTCTGCAAAGTTCTGGATAAACAGAGGCCTGACGCAGCCCCTCCAAACTGAGATAAACGACTTGACACAAGCAACGCTTGAGAGGGACAGGAAGGCCGTTTGGCCAAGTTCTCTTTTCTTCATGGGAAACGTCTCAGGGGTGTTTGAGAAGCACTTGGCTGTAATCTTGCGGTTCCTGCCGGCCCAGCTGCCCAATCTCATCTTAAATCTGCAGTTCCAACTCAAACTAAGAGCTAGTCCCCTTGCTGTCTCCCTTGCAAAGGCCTCCAGCACGGGCCGCAGCGGGACCGGCGGCATCCCCCGTTCAGCGGCACTGTGCTTGATTGAGACAACAAACCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72348 lncRNA downstream 219369 42205270 ~ 42205559 (-) True G57873
TU72332 lncRNA downstream 249221 42173258 ~ 42175707 (-) True G57858
TU72308 lncRNA downstream 368800 42041199 ~ 42056128 (-) False AMCG00009582
TU72239 lncRNA downstream 609121 41814601 ~ 41815807 (-) False AMCG00009571
TU72031 lncRNA downstream 1491718 40932965 ~ 40933210 (-) True G57600
TU72494 lncRNA upstream 38599 42468185 ~ 42468759 (-) True G57982
TU72500 lncRNA upstream 48135 42477721 ~ 42478112 (-) True G57988
TU72510 lncRNA upstream 109853 42539439 ~ 42540113 (-) True G57998
TU72547 lncRNA upstream 219264 42648850 ~ 42673707 (-) False G58025
TU72563 lncRNA upstream 267311 42696897 ~ 42697133 (-) True G58039
AMCG00009592 mRNA downstream 90380 42326869 ~ 42334548 (-) True AMCG00009592
AMCG00009589 mRNA downstream 170826 42243388 ~ 42254102 (-) True AMCG00009589
AMCG00009590 mRNA downstream 195149 42226895 ~ 42229779 (-) True AMCG00009590
AMCG00009584 mRNA downstream 262325 42143592 ~ 42162603 (-) True AMCG00009584
AMCG00009585 mRNA downstream 322693 42085281 ~ 42102235 (-) True AMCG00009585
AMCG00009598 mRNA upstream 17 42429603 ~ 42429987 (-) True AMCG00009598
AMCG00009597 mRNA upstream 5649 42435235 ~ 42444068 (-) True AMCG00009597
AMCG00009596 mRNA upstream 45300 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009601 mRNA upstream 81250 42510836 ~ 42517883 (-) True AMCG00009601
AMCG00009603 mRNA upstream 107642 42537228 ~ 42537555 (-) True AMCG00009603
TU71924 other downstream 2267457 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3587364 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3842108 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5204852 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6552331 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 239541 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 1052835 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1559925 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 2078667 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2112308 44541894 ~ 44542809 (-) True G58584

Expression Profile