RNA id: AMCG00009601


Basic Information

Item Value
RNA id AMCG00009601
length 2757
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00009601
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42510836 ~ 42517883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGTTGCCAATTTTCACTACATCACCCGAATGAACAGCGGCTTCAAAGTGTACATATTGGAAGGTCAGCCCAGCCTGAGAACCGAGGACCGGTACCGGCACCTGTCCAGTCACAGAGCGGCGCTGCCTTCCGTCTACCCGATCAAGCGCAAGCACAGCCCCGAGCGAAGCCTGGCCGCAGAGGAGAGGCCTGTGAAAGTGCGCCGGTCGCCCCTGGCTCTCATATCgagagagagggtgctGTTTGGGAACGCCACCCGCAGCTTCCAGAGGCAGTCCAGCCGCAGCCCCACCGAACGCCAGGCTCCACCCACACAGGCCGCGACTGTGACAACCACCACCCGCAGCCCCCCCCACAGTCCCCCGGCCCACCAGTTGCCCAGCCCCATGTACGCCGGCCCCCCCATGGATGAGCCCCTGGCGCTGATCAAGAAACCCGGCTACTGCTCGCCCACCGAGGGCACGGTGCCCAGCTCGGACGTCAAGGCCCACAGCCCCACTACCACTCGCGTACAGATCCGCCCCTCTGTGATCACGTGTGTGACCTCCAGCTCCCGATTGAACAGCAAGTCTCCTGAGCTGCCCTCCAGTGCTTCTGTGATGTCACCCCCTGCCTGCGACCCTGTGGTAGAAGAGCATTTCCGCCGCAGCCTGGGTGTCAACTACCGGCAGGCCGACTCGGGCCAGCACTCTGTCAGTGTATCTGTGGACGACCACTTCGCCAAGGCGCTGGGCGACAAGTGGCTGCAGATCAAGGCATCCCCCCCACCAGCTAGCCCCAGCTACGGTTCCTCACCCAGCAGAGGCCCACAGAGCCCCCACAGCCCAGCCGGGGCCTCTGGGCACCCCACCAGCCCGTAAAACCAAAACTCAGTGGTCAGCCATCTTTCCGCTCAGGAGAAGCTGGGCGGCTGGCGGCAGAGGTAAAAAAcgaaatcagaaaaacaaataaaaccaaccaacaacaacaaaaacgcTGCTCAGACTTTATCAGCCAAGGGAAGGGCCGATTGATTTGTGAGAACTACTGTTGATGCCGCCCTCGCCCTTCCCCCGCCCCCATTCTAGCTGGGTGGCGTGCAGGGTTAAAGTAAAAGccggggattttttttttcccagcacGATCTGAAGCTCTTACCTACCCACCTTAATGACCTCAGGAAggtaaaaaaaagatatatatcaCAGGGTGAGCAAGAGTGGGAAGATTGGTGATGGTGGCGATCGTTTGGCAAAACGTTCAGCTCTCTTGCTTTCTGAGAACTCGGAAAAAGGAATCCAGAAACAAGAccttgcattgtttatttttttgtgtttttctttcccggGGGAAGGATCACAGAGTTAAcaaggagagaaacaaaacaaaacaaaaaaaacacagtgctCTCAGAACAGGCGCAGGGGAGAATAAGTCAGCTTTAGGTTACTTGACGTACCATAGAGTGATCAATGtctaaagaagaagaaaaataaaacacgtgaatgcaaacacacacacatacgcctAGCAATGGCGATGACACGATGTGAATGAGATATCAAGAAAACAGTGTCTGTATGACAGGGTGTCAGGTGTGcccaaataaaagcaaatgccCTGGTCATTGTGGCAGTGGCAAGGACAAATCGGCAGCAAAAGACATCTGTCTTGTGTAACTTGTAAtctggagtaaaaaaaaaaaaaagaaaaaacgtttGAGAGGTGCTTTTAGGAAGCAATGGTCATTAGTCAGTGGCTTTACTCAGTCCTGCTTTGCATTTCACTGTTGATTCTTAACTTGCAAACAGGTGGAGGGACAATCTTATTTGGGCCACACCTCAATGCATTATTCCACATGAGATCAACCCTCAACATTTCATCCCGTGCTTAAGTGTGATTGCAGCGTCTCTGCGCTGTACTACCACAAGGATCGGTACTCTGGACATGTAGAGAACATGAGCTCACGGGCCTTTCTGTGTCTTATTTTCCAAAGGGGGCCTTGGTTAGCAACACATGCATCAGACTTGGGAACCATCTAGCTTAGAAGAGATCCAATGGCAGGTTATAGCATTCCCTCACATTTCAAAACACGTGACTTCAGAGCCGCAGGACATACCAATTCTGCAGATTGTGTCACATCGCACTCCACCTTGCCAAAGAGAGATTCCCAGGCCTTTTTATGCAAAAACAGCTCTCGATCAGAGTTGGTAAACAAAACCATGCATTTAGAGAAATCCTGAGAAACACATGCATGGACCACTCCAGTATTTAGGCTAGGAGAAGTGGGAAGGGCGCAGTAATCCATGTGTAGCCAATTCTATTCAGTAAGATGGCTCTGCGTTGTCTTCCGAGTTTGTTTCTTGGatggtttgtgtgttgtgttcataGGGGTCTGCCTCCAGCAACAGGCACGTGGGACCCCCAGTGTAAAGCTTACATTTCTGTACATAGCTGTCCAATTTgtcactgtattgttttctttttcttgcccACGCCGATGCCAAGGAAACAGTGTAGAAAAAGCGTGTTGAAAGTcttttatatgattattattacaagttTTAAATCAGGGTTTCCTTTTCGGAAAATCTAGGGGATGTCTGTCCTGTCTGTATTGGATTGTTGtcgttttatttttcctgtaacAGGATTTACTTTTACTGTgttctttaaaaactaaaatctgtctctgttattatttattatggagTCTTTCTCCATGCTCGAATGTcttttgtgattgttttgtaCTGGTAAAAATGGAACTgacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72500 lncRNA downstream 32724 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 42077 42468185 ~ 42468759 (-) True G57982
TU72348 lncRNA downstream 305277 42205270 ~ 42205559 (-) True G57873
TU72332 lncRNA downstream 335129 42173258 ~ 42175707 (-) True G57858
TU72308 lncRNA downstream 454708 42041199 ~ 42056128 (-) False AMCG00009582
TU72510 lncRNA upstream 21556 42539439 ~ 42540113 (-) True G57998
TU72547 lncRNA upstream 130967 42648850 ~ 42673707 (-) False G58025
TU72563 lncRNA upstream 179014 42696897 ~ 42697133 (-) True G58039
TU72703 lncRNA upstream 488718 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 488718 43006601 ~ 43010065 (-) False G58149
AMCG00009596 mRNA downstream 34872 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009597 mRNA downstream 66768 42435235 ~ 42444068 (-) True AMCG00009597
AMCG00009598 mRNA downstream 80849 42429603 ~ 42429987 (-) True AMCG00009598
AMCG00009599 mRNA downstream 81250 42424928 ~ 42429586 (-) True AMCG00009599
AMCG00009592 mRNA downstream 176288 42326869 ~ 42334548 (-) True AMCG00009592
AMCG00009603 mRNA upstream 19345 42537228 ~ 42537555 (-) True AMCG00009603
AMCG00009602 mRNA upstream 27745 42545628 ~ 42547223 (-) True AMCG00009602
AMCG00009612 mRNA upstream 82215 42600098 ~ 42607648 (-) True AMCG00009612
AMCG00009616 mRNA upstream 172825 42690708 ~ 42703202 (-) True AMCG00009616
AMCG00009615 mRNA upstream 204744 42722627 ~ 42739824 (-) True AMCG00009615
TU71924 other downstream 2353365 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3673272 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3928016 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5290760 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6638239 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 151244 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 964538 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1471628 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1990370 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 2024011 44541894 ~ 44542809 (-) True G58584

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_05442832_05459768.mRNA True 1875 mRNA 0.53 10 CI01000057 5442784 ~ 5459768 (-)