RNA id: AMCG00009602


Basic Information

Item Value
RNA id AMCG00009602
length 819
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00009602
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42545628 ~ 42547223 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAATGGGCTGCTCCCTGGCTTTGTTCAGTTTCCTGCTGGCTACTCAGGTGCCTCCCTCTGACAGTGGCAAAATCTTAGTGTTCCCACTGGACGGCAGTCACTGGTTGAACATGCAGGTGTTGGTCAAGGGGCTCCACAGCCGGGGTCATGAGGTCACGGTGCTGCGGTCCTCCACCAGCTGGTACGTGGTGGAGAAGTCGCCCCACTACACCTCCATCACCATCCCTCAGGAGCAACCAATACTCATGGAGAGCCAGGAGATTATGAGTAACTATCTGAGGCAAACGCTGGAGATCCAAATGCAAGAAGGATCCCCACTGGCATTCCTTAAATTATACAGTTTCAAGTTCAAGTTGTTAAACAATAACCATGGTCTGATCGCACGCAACATTGTCTCCATCTTCGAGGATGAGGCTCTCATGAAAAGACTGCAGGAGACCGGCTTCGATTTGGTCCTCACGGACCCGGCTATCCCGGTTGGGGTTTTGGTGGCTCATCGGCTACAGCTTCCCTTGGTCCTGAATGTCCGCTGGATCATCAATGGGGAAGGTCACTTTGCCATAGCCCCTTCGCCACTCTCCTACGTCCCCAGGTTGTACTCCAAGCTTCCAGCTCAGATGAGCTTCCAGCAGAGGCTCACCAACTTCCTCTTTTACGGCCTCAGCCTGTATGTTTACTGGTTTGTCACCAATCCCCCTTACCAGGCTCTCCCTCAGAAAGTCATCTGGAGGCACTTAGGGGAGAGGCCTTTGAATCTGGGCAACAATACCCTCCTAGTCAAGATGTGCAAGAGAAAGAAGTCCAAGCTGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72510 lncRNA downstream 5515 42539439 ~ 42540113 (-) True G57998
TU72500 lncRNA downstream 67516 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 76869 42468185 ~ 42468759 (-) True G57982
TU72348 lncRNA downstream 340069 42205270 ~ 42205559 (-) True G57873
TU72332 lncRNA downstream 369921 42173258 ~ 42175707 (-) True G57858
TU72547 lncRNA upstream 101627 42648850 ~ 42673707 (-) False G58025
TU72563 lncRNA upstream 149674 42696897 ~ 42697133 (-) True G58039
TU72703 lncRNA upstream 459378 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 459378 43006601 ~ 43010065 (-) False G58149
TU72810 lncRNA upstream 839960 43387183 ~ 43387918 (-) True G58246
AMCG00009603 mRNA downstream 8073 42537228 ~ 42537555 (-) True AMCG00009603
AMCG00009601 mRNA downstream 27745 42510836 ~ 42517883 (-) True AMCG00009601
AMCG00009596 mRNA downstream 69664 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009597 mRNA downstream 101560 42435235 ~ 42444068 (-) True AMCG00009597
AMCG00009598 mRNA downstream 115641 42429603 ~ 42429987 (-) True AMCG00009598
AMCG00009612 mRNA upstream 52875 42600098 ~ 42607648 (-) True AMCG00009612
AMCG00009616 mRNA upstream 143485 42690708 ~ 42703202 (-) True AMCG00009616
AMCG00009615 mRNA upstream 175404 42722627 ~ 42739824 (-) True AMCG00009615
AMCG00009622 mRNA upstream 244072 42791295 ~ 42797463 (-) True AMCG00009622
AMCG00009621 mRNA upstream 251822 42799045 ~ 42811220 (-) True AMCG00009621
TU71924 other downstream 2388157 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3708064 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 3962808 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5325552 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6673031 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 121904 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 935198 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1442288 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1961030 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1994671 44541894 ~ 44542809 (-) True G58584

Expression Profile