RNA id: AMCG00009610



Basic Information


Item Value
RNA id AMCG00009610
length 942
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00009610
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42608497 ~ 42628717 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCACCCTACGGAGTGGGAGGTCAGTGCGTTACTCAAGGTGGATCTCGACGACGGTCATCTCTGGCCTCACGGTTTGCCCTGCCGTCGACCTGCTATCGCCACGATGTCGAACGAGTGTATGGTCTAATCCGCAGCTGTGTGAAGGGCTATACAAAGAAACTTTACGTCAATGTTAATAAGTATGCGCTCACCTATAAACAACAAGGAGTGGTGCTGATCACCACTCCCAGATTCCCTGTGGTGGTGAAGATGGGACACGCTCACTCGGGAATGGGCAAGGTGAAAGTGGACAACCACTATGACTTCCAGGACATTGCCAGCGTGGTGGCACTCACCAAGACCTACGCCACGTCGGAGCCCTTCATCGACGCCAAGTACGATGTCCGTATCCAGAAGATCGGGAACAACTACAAGGCCTACATGTATCGGCAGTGGGTGGACTCCTGCTCAGAGATTTTCGGCGGGCTGGACATGTGTGCTGTGGAAGCCCTGCATGGCAAAGATGGCAAGGACTACATCATCGAGGTTGTGGGCTGCTCCATGCCCCTGATTGGAGAGCAACAGGATGAAGACCGGACCCTCATCACTGACCTGGTCCTCAACAAGATGAACCAGACTCTTCCACGCACCCCCATCCCATCACCCCTTCGCCCTACTGCTGGCCTGCCCACCCAGCCGCCAGTGCAGCAGGCAATTTCTCCCCAGCCAAGTCAGGCACAGCAGAGGCCACCCACGGGTCCTCAGCAAGGACCCCCAGCTCAACAGCGCCCCCCGCCACAAGGAAAGGGTGGAGATGGTGGTTGTGAGGTGGTGGTTGTGAGCGTGGGTGAGGGGGGCAGACAGGGCAGGGGGGAGACACTGGagtgtaatggaaaaaaatccATGCTGGAGGGATTGTGGTTTTATAATGCCTGGACCAAGGATGACACTGTTAACTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72499 lncRNA upstream 130385 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 139895 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 173345 42432920 ~ 42435152 (+) False G57964
TU72466 lncRNA upstream 173373 42432877 ~ 42435124 (+) True G57964
TU72449 lncRNA upstream 180449 42427842 ~ 42428048 (+) True G57948
TU72524 lncRNA downstream 822 42629539 ~ 42636453 (+) True G58008
TU72671 lncRNA downstream 309290 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 377884 43006601 ~ 43010002 (+) False G58148
TU72699 lncRNA downstream 377907 43006624 ~ 43010050 (+) True G58148
TU72734 lncRNA downstream 583993 43212710 ~ 43213028 (+) True G58178
AMCG00009608 mRNA upstream 8763 42596093 ~ 42599734 (+) True AMCG00009608
AMCG00009605 mRNA upstream 37558 42566620 ~ 42570939 (+) True AMCG00009605
AMCG00009606 mRNA upstream 61778 42531717 ~ 42546719 (+) True AMCG00009606
AMCG00009604 mRNA upstream 118528 42488437 ~ 42489969 (+) True AMCG00009604
AMCG00009595 mRNA upstream 144767 42446957 ~ 42463730 (+) True AMCG00009595
AMCG00009609 mRNA downstream 704 42629421 ~ 42632114 (+) True AMCG00009609
AMCG00009611 mRNA downstream 4718 42633435 ~ 42633638 (+) True AMCG00009611
AMCG00009607 mRNA downstream 13476 42642193 ~ 42649279 (+) True AMCG00009607
AMCG00009614 mRNA downstream 34677 42663394 ~ 42665431 (+) True AMCG00009614
AMCG00009613 mRNA downstream 46511 42675228 ~ 42688453 (+) True AMCG00009613
TU72303 other upstream 530256 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1613838 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2503549 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2659297 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3171502 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1304235 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1757780 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1938648 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1955845 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2004033 44632750 ~ 44651967 (+) True G58600

Expression Profile