RNA id: AMCG00009612


Basic Information

Item Value
RNA id AMCG00009612
length 1848
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00009612
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42600098 ~ 42607648 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACTGACTGGAAGAGGAAGAATGAGTGGTGCGGATTGATGATAATTATATTGAcagcagcagtaataataatcaggGCCCCTGCCCACACTCACTGCTGCACAGTCATGTGACCTGTAGTGCTGCCCACGCCCCCCTGTCTTAATCACGGTTGCAGGAAGCGAATCGGTCCTGTCTGGCTGTGTATAAAAAGGGGCCGTTTCTCTCAGCAGTCCAAGCAAACAGCCCGGTCTGCCAGAGAGATCACACCGAGATCACACCGAGATCACACCAAGATCGCACCGAGAATAAGCAACAGGTAAGCAGGctgccagtgtcagtgtGCTGCAGGTTGAATCTCCAGtcgaacagacagacagacagacagaatgaACTCCCagctgagtgtgtttgtgtccagCCTATCCCTGGCCCTCCTGTTAGTGGCCCTGAGCGAGGCCTGCACATGTGGTCCCCAGCACCCCCAGACCAAGTTCTGCACAGCTGATGTTGTGATCAGAGGCAAGATCGTTGGGATGGAGCAGATTTCCATGGACAACCAGACCGACGGTGCGCAGTGGATCCGCTACGAGGTCAAGCAGAGCAAGATGTTCAAGGGCTTCGAGCGCGTGGCCGACGTGCAGTACATCTACACCCCCCATGACGGCGGCGTCTGCGGCTTCGAGCTGGACCCATCGGGCGCTGCCAAGCAGACAGAGCTGGTGGTGGCGGGCATGCTGACTGAGGATGGGCGCCTGACGGTGTCGGTGTGCAGCTTCATCCAGCCCTGGGACAAGCTGAGCCCCGGGCAGAGGAGGGGCATCATGTACACCTACAAGAACCACTGCGACTGCAGGATCAACCCGTGCCACTCCGTGCCCTGCGCCCTCAACTCCGAAGCTGAGTGCCTGTGGACGGACGGGCTGTTCTCTCGCGGCTGGGACCACGTCCAGGCCCGCCAATATGCCTGCGTACACCAGGAAGGCGCCGCCTGCGGTTGGGCCCCCCAGAAGCCCCTGCGCGCAGACGCCAACCTGAGAGCCCAGCAGCACTAGGGCACCGGCACCCAGCATGTCTCGTTCTGTGGTACCAGTCTTACCTTCCCGAGTCAAAGGACTGCATGAGGATGGAGTAGTGGATGGCGATTgtgattgtttatttctttgtttattattattattatattggtcagcagatgcccttatccagggcgatttaaaCAGTTTGTCACCTTATACATCTATACAGCTAGGTTTCTACTGGAGCATTTTGGGTGCAGTGTCTTAttcaaaggtacaacagcagtgtcccccacaaAGGACCgaacccacaaccctcaccTCAGgggtccagagccctgaccactagcatattcatttttcttattGCATTCAGATTGAGAAATCTTATTTTTCAAAgggaacaaacacagaaatacgGATCTGTTCCTGCCTTAATGACTATTGCAGAAATCCTGATGTTAGTTTAACTGTGGACGGGCTATAAAGTTAGCAAAGTTGGTCACCTAGTGGGGGGATGTTGTAACTGCTCTTTTTAACACTCAAATGTCAGATGTGTAGTGGACTCACACGCTATTGAAATACAAGTAACACAGCGAAGCCCGTAGTAAACAACAGCATTGCGTAGCACAGAGAGATCTTAGTATTTGTAACTCCAGCAGGACTTTAATCCATCGGCCGAGGCGTTTGCACGTCTATACAAACTTACTAAAAGAAAGTGGCGCAGACTGATATCAGAAACActtttttatgtgtatgtagCTTTCAAATTttgttgttaattgttttttctacttttagtttatttttctatgcctttgaataatgaaataaaaagactTAACACGC

Function

GO:

id name namespace
GO:0052547 regulation of peptidase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72510 lncRNA downstream 59985 42539439 ~ 42540113 (-) True G57998
TU72500 lncRNA downstream 121986 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 131339 42468185 ~ 42468759 (-) True G57982
TU72348 lncRNA downstream 394539 42205270 ~ 42205559 (-) True G57873
TU72332 lncRNA downstream 424391 42173258 ~ 42175707 (-) True G57858
TU72547 lncRNA upstream 41202 42648850 ~ 42673707 (-) False G58025
TU72563 lncRNA upstream 89249 42696897 ~ 42697133 (-) True G58039
TU72703 lncRNA upstream 398953 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 398953 43006601 ~ 43010065 (-) False G58149
TU72810 lncRNA upstream 779535 43387183 ~ 43387918 (-) True G58246
AMCG00009602 mRNA downstream 52875 42545628 ~ 42547223 (-) True AMCG00009602
AMCG00009603 mRNA downstream 62543 42537228 ~ 42537555 (-) True AMCG00009603
AMCG00009601 mRNA downstream 82215 42510836 ~ 42517883 (-) True AMCG00009601
AMCG00009596 mRNA downstream 124134 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009597 mRNA downstream 156030 42435235 ~ 42444068 (-) True AMCG00009597
AMCG00009616 mRNA upstream 83060 42690708 ~ 42703202 (-) True AMCG00009616
AMCG00009615 mRNA upstream 114979 42722627 ~ 42739824 (-) True AMCG00009615
AMCG00009622 mRNA upstream 183647 42791295 ~ 42797463 (-) True AMCG00009622
AMCG00009621 mRNA upstream 191397 42799045 ~ 42811220 (-) True AMCG00009621
AMCG00009624 mRNA upstream 205396 42813044 ~ 42836293 (-) True AMCG00009624
TU71924 other downstream 2442627 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3762534 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4017278 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5380022 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 6727501 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 61479 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 874773 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1381863 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1900605 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1934246 44541894 ~ 44542809 (-) True G58584

Expression Profile