RNA id: AMCG00009616


Basic Information

Item Value
RNA id AMCG00009616
length 1953
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00009616
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42690708 ~ 42703202 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCCCACGTGCTGCAATCGGACTGTCCCGAGGCTGTGGACTGCGTCGCTGCCTGCTGGCTTCACCTGCATCTCTCTCTTCCCCGTGCATGTTATCCTTCTCCGGAAGATGCGGTGtctcctctcccttctctcaCACTGACAGCGACCGTCTCCGAGAAGCACTGTGTGTGGATGTGACGGCTATGGCCCCGCTGCGGCTCCTTCCCTGGCTCCAACTGTTCCTTTTCGCTGGACTGTCTAAGGAGGATGGGCAACTCGTCATCTCCGCTCAGGACTGCACCCTGGACTGCGTCATCAAGGGGGATCCCAAATGCGAATTCTGTCGGATCAGTCAAGAGGATATTGAGTTAACCCTGGGGATCAAGACCGACAAAATATTTGGCAGTTGTGTCCCCTGGCCCTGTCATTTTCTAATGGGCCTGGACTCCCCCTCACTGTGTCAGCACTTCGTGGGCGCCCCCCGTGACGTCACCGTGGAGTTTGTCTACAGCCAAGACCCGGGATACGACACGGTTGTTGTGTCCTGGAGGCCCAGTCAATATGGAATCTCGTTCCTCAGAGGGTTCCAGGTGTCCGTCCAGGCGCTGGGGGGCATGCTGGTGGGATGCCAGCTGCTTTTATTCCAACGCAACCTCTCCCTGGAAGCTGTTGATGCAGAGAAGGTGTACCAGTCCGACCCATTTCCAGCCCTGGCCCTGGGCTCCCAGTATGTGGCGACAGTGATGGCTTTACCAGTACCAGAGCAATGGGAAAAATACCAGCAAGAGGAAAAGTACCAGCAAAGCAAACAGTTCAGCACCCAGAATTGGTACCCCACGGATATTGCAGTGGAACAAGAGGGGGCAGATGTGATTGTGACCTTTAACCTCGCCCCCCCTAGCCTGGGGATCAATGGCTACTTTTCTTACTGTTACGGAGCCGGCACAAGAAACTACACAGAGTTCAAAGTGAACCCATCTGAGAACCAGACCCATCACAGCTTCCGTCTAGCAGGTCTCCGGGGGGGTGTGAACTATTCCTGTGGGATAGCCGCGGACCAGGTGGACCCCGTGCACAAAGGATTCACCTTCCACATGAAACCGCCCCCCCAAGAGCCGCCCCCCCCGGGCCCCAATCTGGAGTCCGTGATCCTGGTGCTGCTCCTGTTCGTCACTGTGCTGCTAGCTCTTGTCGCCGTTGGCTTCTTGTTGTTCCTCAAGAAGTGGAAagaggggaggaggaagagagcagAAATGCAGGCACCGGCACCGTGCAACTACAAAGAGGCCCCGCGTGAGGGGCCCCCCACGCAGCCCCGCCCCCCCCGGCTCCTCCTTTGCTACTCCAACAGGGACGGCCCGGCCCACATCGGGGTGGTGATGCGGCTGGCCGCCTTCCTGCAGCAGCACATGTCCACTCAGGTACACCTGGACCTGTGGGAAGGTCTGAGCCTGGTGGAGGAAGGGCCGATGGGTTGGTACACCCGACGGATGCAGGAGAGCGACTTCGTGCTGGCCGTGTGCTCACGAGGGCTCTGTCAGCTCTTGGACAAGCGGGCGCAGCACCACAGAgaaaaggaagaggaagaggaggaggagagctggGACGGAGATGTCTCAGCAGCTGCGGTGTCCTTGATCGGGGAGGAGATGGGCTGGGCTGCCTCGCGGGGGCAGGACCTCTCCAAGTACATGGCAGCGATCTTCGAGTACTCCAGAGAGACGGACTTCCCGGGCCTGCTGGGCTTGGCCTCCCGCTACGTCCTGCCCCAGGACCTGCCCCTGCTCTTCTCGCACCTCCACGGGGTGGCGCTGCATGGGCCGGGGCGGCAGCTGCTGGTGGAGAACGTCTCGGGTGAGGGGTACCTCTCGGTGCCAGCAGGGGCGGCACTTAGCCGAGCCATCACAGAGGCCAAGGGGGCGGGGGAAGACGAGGGGCGACTGGGAGGGGAAGAGGAAGCCCTGTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72547 lncRNA downstream 17001 42648850 ~ 42673707 (-) False G58025
TU72510 lncRNA downstream 150595 42539439 ~ 42540113 (-) True G57998
TU72500 lncRNA downstream 212596 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 221949 42468185 ~ 42468759 (-) True G57982
TU72348 lncRNA downstream 485149 42205270 ~ 42205559 (-) True G57873
TU72703 lncRNA upstream 303399 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 303399 43006601 ~ 43010065 (-) False G58149
TU72810 lncRNA upstream 683981 43387183 ~ 43387918 (-) True G58246
TU72857 lncRNA upstream 772631 43475833 ~ 43476088 (-) True G58277
TU72932 lncRNA upstream 828233 43531435 ~ 43547585 (-) True G58336
AMCG00009612 mRNA downstream 83060 42600098 ~ 42607648 (-) True AMCG00009612
AMCG00009602 mRNA downstream 143485 42545628 ~ 42547223 (-) True AMCG00009602
AMCG00009603 mRNA downstream 153153 42537228 ~ 42537555 (-) True AMCG00009603
AMCG00009601 mRNA downstream 172825 42510836 ~ 42517883 (-) True AMCG00009601
AMCG00009596 mRNA downstream 214744 42474886 ~ 42475964 (-) True AMCG00009596
AMCG00009615 mRNA upstream 19425 42722627 ~ 42739824 (-) True AMCG00009615
AMCG00009622 mRNA upstream 88093 42791295 ~ 42797463 (-) True AMCG00009622
AMCG00009621 mRNA upstream 95843 42799045 ~ 42811220 (-) True AMCG00009621
AMCG00009624 mRNA upstream 109842 42813044 ~ 42836293 (-) True AMCG00009624
AMCG00009623 mRNA upstream 154601 42857803 ~ 42863632 (-) True AMCG00009623
TU72548 other downstream 17001 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 2533237 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3853144 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4107888 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5470632 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 779219 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1286309 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1805051 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1838692 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1862867 44566069 ~ 44566834 (-) True G58589

Expression Profile