RNA id: AMCG00009617


Basic Information

Item Value
RNA id AMCG00009617
length 2169
RNA type mRNA
GC content 0.56
exon number 18
gene id AMCG00009617
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42707757 ~ 42722609 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGGCTCTGCCTTTGGGCAGGAGAGACGCGCCAAGGTCGGAACAAGGAGCAGCAACGCGCAGAATCAGCTGCTTCAGCTGGACATCAGCCCAGTCTCTGCACAGAACAAGGGCAGCAGATGTAGAAGGACCGCGGGAGACATCCAGTACTCCTTCCAGAGCTGTGATACTCTATCCCCCTGCAGAGCAGAAGGCGGGACTACTGAGGAGTGTGAGGTGGCTATTGGTCAGCCTGAGAGCCTCCAGGTGACGAGTGTGACCGATGGCCGCTGCCCGGGCTCCGAGGCTGTGGTCCTGGCATGGACACCCAGCCGGTATGGCATGGCATTCCTCCGGGGCTTCCATGTGCGTCTGCACTCTGAAGACGGGAGTGAAGTTAAATGTAAGAGACTGGCCATCAACAGAACCAGGCAGCTGGATGCCTCTGACGCTGACATTGAGTTTCGAGCTTCATTCTGTGTCAGTTTCAGCACCTTGTACTTCATCCAGGTTTACGCCTACCCCTTCCTCCACATCAAGACTGACGAGTTCCGCAGAGCTACAACTACACACAGGTCCCGGGATTGCATGAATTTTGAAGGATACGCTAAGGAGTCCTGCATCAAAAAATGGGTTCCGTCCAACATCACCATCTCAGGTGTTGGCACCTCAGTCCGTATCAGCTTTAACACGGCCCCCAACAGCTACAGCATCCCCTCCTACTCTGTGTTCTATGCCAGGCAGCACACAGCGAATTGGAGCTATGTGACACTGCAACACAAGTCAGCAAGACATGGATATGTGGAGACAACTCTGCAGGATCTCACGCCAGGAGCTAACTATACCATACAGATCTTCTCTGATCTTCTAGATTCCACTCGAAAGCAGATAGTTTACTACCTGAAAGAGACAGAGGCGTCTCCCATTTACGTCGCAGTGACGGCCACAGCTCTGATACTGGTCACCGTGGCCGTGATCCTTTCACTCTTCCTACACAAGTGCctcaggagaagaaaaaacgGAATATCCAAATCTGACCTCGCCGGGACCCTCATGCTCCCACCTTCTGTACCCCCCCAGAGCTGTCCCCGGAGGCCCCCGCCCAGCATATTTCTCTGCTACTCCAGCTGCGAAGGTCCCGGGCACATCAGACTGGTGCTGGCCCTGGCATCCTACCTGCAGCAGCACTGCGCCTGCCAGGTGACCCTCGACCTATGGGAAGAGGAGGTGATGGCCAGGGAAGGTCACATGACATGGCTGAGCGAGCAGATCGGCCGGTGCCGGTTTGTGATGGTGCTGTGCTCAGAGAGCCTGAAGCGGCTGGTGGAcctgccctcctcctcctcctcctcctcctcctcctcttctccagATGACTGTAGAGGAAGGCATCTTTTCATGGCTGCTGCCGCCCTGGCCGGAGAGCAGCTGCTGAGAGCCCAGCTGAGCTCAGGGGACCTGTCCAAATTCATCACCGTGAGTTTCAGCCAGGGAGTTGAGGGTGGCGAGGAGAGGAGCCACGTTCCCCGGGTGCTGGAGTTGGCCACCCACTACCAGCTCATGGAGGATTTCCCCCAGCTCTTCTCTCACCTTCACTTCCTCCCGCTGGAGCAGCCCGGGGTCCGTCTCCGAGTCAGCAACATAAACAAGGATGATTACTTTTGCGTCGGTGTTCAACACCAGTGGAGGACGGTTCGCAAGGAATgctggTATCCCCAGTTTGTGAATCTGTCGTTGGAGGGCCAAAGGGTGAAGATCTCTTTCACTTTGGCACCCGTGGAACTGGGAATCCAGAAGTACATTGTTTATCACGGAGAACAGAAAAATGGACACCAAAATCCTCAGGACATCCAGTCCACTGTAGTGGCGGTCAATGCGTCCGGAGGGGCAGGACAAGCGGAGCTCCACAGCCTGAGGCCGGGCAGAACCTACACGGTCATGGTTGCTGCTGATGTGGAGGACGCTGTAAGGAAGTCCGTCAATTTCACCTTCCCCGTGGCAGTGGAACCTGTTACCCAAGACACGTTCTCCTCTCCCTGGATTGCCGGTGGCGTGGGGCTGCTGAGCATAATCCTGCTTGTGAACACCATATTCTGTACTCTCAACTACTGCCGGAGAAAGAGGGaaTCAGTGCAAGAAGTTGTCACAGAGAAGGAAGTACAACGGGAAGCGGACCAGATGATCTGA

Function

GO:

id name namespace
GO:0071705 nitrogen compound transport biological_process
GO:0042886 amide transport biological_process

KEGG:

id description
ko04928 Parathyroid hormone synthesis, secretion and action

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72524 lncRNA upstream 71304 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 229645 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 239155 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 272605 42432920 ~ 42435152 (+) False G57964
TU72466 lncRNA upstream 272633 42432877 ~ 42435124 (+) True G57964
TU72671 lncRNA downstream 215398 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 283992 43006601 ~ 43010002 (+) False G58148
TU72699 lncRNA downstream 284015 43006624 ~ 43010050 (+) True G58148
TU72734 lncRNA downstream 490101 43212710 ~ 43213028 (+) True G58178
TU72753 lncRNA downstream 526794 43249403 ~ 43249641 (+) True G58195
AMCG00009613 mRNA upstream 19304 42675228 ~ 42688453 (+) True AMCG00009613
AMCG00009614 mRNA upstream 42326 42663394 ~ 42665431 (+) True AMCG00009614
AMCG00009607 mRNA upstream 58478 42642193 ~ 42649279 (+) True AMCG00009607
AMCG00009611 mRNA upstream 74119 42633435 ~ 42633638 (+) True AMCG00009611
AMCG00009609 mRNA upstream 75643 42629421 ~ 42632114 (+) True AMCG00009609
AMCG00009618 mRNA downstream 122527 42845136 ~ 42856980 (+) True AMCG00009618
AMCG00009620 mRNA downstream 139794 42862403 ~ 42862624 (+) True AMCG00009620
AMCG00009619 mRNA downstream 140087 42862696 ~ 42886719 (+) True AMCG00009619
AMCG00009625 mRNA downstream 164499 42887108 ~ 42888491 (+) True AMCG00009625
AMCG00009627 mRNA downstream 169089 42891698 ~ 42913492 (+) True AMCG00009627
TU72303 other upstream 629516 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1713098 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2602809 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2758557 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3270762 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1210343 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1663888 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1844756 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1861953 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1910141 44632750 ~ 44651967 (+) True G58600

Expression Profile