RNA id: AMCG00009618


Basic Information

Item Value
RNA id AMCG00009618
length 4212
RNA type mRNA
GC content 0.56
exon number 18
gene id AMCG00009618
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42845136 ~ 42856980 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATgactaaatatattaaaatcccAGAGGACTTAGAATTGTACCTCTTGTGGCTGTTGGAGCAGGTGTTCTTCTGTGGCTTTGCACTCGGGGTTCAGTGTTTGAAGCACTACAACTCCCAGCGTGCCACGGTCCACACGCGTTTCCGGTCATGCGACTGCGGTGAACGGTGCATGCCGGGAATAGATGTTCTTCTGACGGTCCCGTTGACGACGGAGACGCAGGATGAAACTACAACTCCCAGCGGCCAGCGCGAATCGCAGCTCCTGGCGCATGACTTCCTGCTTCCCTTGGAGCTGCTGTTGAAAGTGTACAAATCGAAAGGGCAGCCTTCCAGATCAGGAGAAAAACACCCCGCGCACAGCAGGGCCATGGAGGAAGTGGACAAGATCTTAATTCATTCCCTCAGACAGGCGGGCACTGAGGTGGGTGAGGACGTGCAGTGTGTGAAGCAGTTCTCCAGCGAGCTGATCGTGGAGGCCGTGGTGCGATGTGTGCGTATCATCCAACCGTCCCTTGGCAGCGGCCTCAGCCACCTCCTGCCCCCAGGCATGTCCGCCCGCTTTCGCCTGGGCATGAGCCTCGCCCAGGCCTGCCAGGATCTGGGCTACAAGGGAGAGATCGGCTACCAGACCTTCCTGTACAGCAACGAGCCGGAGATCCGCTCTCTGCTCATGTTCCTGGTGGAGAAACTGCCGCGTGAGAGTGCCGAGTCTTCAGACCAGCCGGCAggCAAATCCGCCCTCCTGCAGAGAGCGATCGCTGCCCAGATCAAAGCCCAGCTGGCTCTGCCTTGGGTGCCGCCCTCCTGCCGAGTGCCCCTCCTCTGCCAAACCCAGGGTGCCACACCGGCTCACAGTTTCCACGCCCAGCCTCTAAGCTTACCGCTGAGTTCCCGACACCCCGGCAAGAAAACTCCAAAAGAGGTGAAAGAGTACTACCGGGAGTACCTGACCCCTGTGACCGCCCAGGTCTCCCAGCACGCCTCGGTGCTGGCCTCCCTGCTGGAGCGCAACGTGGCAGAGCTCAGCACCACTCAGGAGTGGGAGAGCGAGTGGAACAGCCAGGGCCTAGTGTCCCGACTCACGCCCGAGgaGTACAAGTCCCGGAAACGGCAGCGTCTGCAGAAGCGCATCCAGGACCAGCTGCGCCACGCTGCCCAGCCACGCCCCGATGCCCAGCACGTCCCACGCTCCGGCTCCGACCTGGCTGAGCTGCTGAGGACGATCGGCGGAGGAGCCGAGGGGCGGAACGTCCTGGCCAAGGGCACGCGATTCACCCACACCGAGAAGTTTACCTTCACACAGGAGCCGGAGAAGGCGGTGCAGCAGATGGCGGCGGCGGCCGAGACCCTGCCCAGCTCCCGGCAGTCGGAACAGGACCTGCAGCAGCGGCAGGAAGAGGAAGTGACCTCGCTGAGGGGGCAGCTGGAGCAGCTGTCTCTGCGCATCGAGGAAGTGGGCTCCGACATGAAGCAGCTCACCGTGTCCATCGGTCAGGTGTCTGATGAACTGAATCAGAGGGAGCTGAGCAACGTGGAGAAGGAGGGGTCTGTGAGGGTGAAGAAACAGACCATCGACCTCCTCCCCGACGCCGAGAACAACCTGAGCAAACTGCAGGTGCTGGTGGAGGGCAGTGCCAAGCGCGTGGTCAGCCTGGCGGCGCAGTGGGAGAAGCACCGCGCCCCCCTGATCGAGGAGCACCGGCAGCTGAAGCAGCTCTGCAGCAGCCGAGAGCTCGAGTCGTCCAGAAGGCTATCCGAGATCAAGGGCCTCCATGACAAGATTCGGCAGTCGGCAGAAGAAGCCAAGAAGAAGGAGGGCCTGTACAAGCAGCTGATGACGGAGTTCGAGAGTCTGCCCAAAGACGTGTCTCGCTCAGCCTACACCCAGCGCATCCTGGAGATCGTGGGCAACATCAAGAAGCAGAAGGAAGAGATCACCAAGATCTTGTCCGACACCAAGGACCTGCAGAAGGAGATCAACAGCCTGACCGGGAAGCTGGACCGCACGTTCGCCGTCACCGACGAGCTGGTGTTCAAGgacGCCAAGAAGGACGAGTCCGTGCGCAAAGCCTATAAGTACCTGGCGGCCTTGCACGAGAACTGCACCCAGCTGATCCAGACCATCGAAGACACGGGGACCATCATGAGAGAGATCAGGGACCTGGAGGAGCAGATCGACACGGAGGACGGAAAGAAGACCACGAGCAACCTGGAGAAGATCCTGGAGGACTACAAGGCCATCCGGCAGGAGAACGCCGCACTGGCCGCTAAGATCCGAGAGGCCTGAGAGACACCCGGCCCGTTccgccccccccaccgcccccaCAGAGCATCTCTGCCCCCTGCCggtcccctctctcccccccgcGCCGTCCGATTggggggggtggcggggggcGGAGTTTGGGGGGGTTCGGGGGTCAGATATTCCATCTCCAGATTGGCTCGCCTGCCACCACCCTTGTCTTGGCATCATTCATCGCTTCACCTCGACTTCCTGTTTGCTCGCCTTCAAGACCGCGGGAGACGAGGAGACGGACCAGGACGGGCGAGTCAGATCTCTCCTGCGCTGACGCGGACGCATCGATGGACTTTTATACTCTATATGTGCCGTGTGgggtttaaataataataataatgaatgaacaCAGTGGTGAATATTGCCAACGGTATAAATATCTGTTTCTACTTCATCTGGCTGGATTGGAGAGACGGACCTTGCATGGCCTTCTGACTTGTCCAAGGGCGGTTCTTAATTTTTAATCATCGCtatattagtagtattattattattagtcatatTCTTGATGAGGAATCTCTGTACGAAAGTCTTGGTTAGTCCCCCCCGCCTACTTTTAATCGCCTGATATTTTTTGGTAAATTGACTTCTAATCGACAGGGTTTAATCGCGCATTAAATATGTTCCAATAGTGAATGGGTGGGGAGAAACTAAAAGCAGAAGAATGTGTGTAGCTGAACTCCCACTTGTCGCCGCCATGTTTGTGGTCAGTCTTGGCAGCGTCGGAGTGAGGGATCGATTTTTGTAGCAGCTGCCTGGGGGGAGAACTGGAGGCGGGAGTGGCGGCGGCTCTACGGATCACATGTCCGCGTCTGATCTGTAAAGCGGGACCGGTTTGTGTCTAATTACCGCGTTGTCTCGCTCCTTCTCTGTGCgttttaagtgtcttttggtTTCGGATCACATGCAGCCTTATTGCAGTTGGCTCACACGTTGTCTTTTGTCATATCACCCCCCCGATTTTAGCGCAGCGGTGTCGGGACAGCTGCGCCACGTTCTCTAGAGAACAAGCCTTGAGCTAGCCTGCCCAGCTGCCCATTCGCCCAGTTCATCTCCTTCCTTCCCAACTATAACAACGTTCAGGAATTTCCCACTTTCCCTCGGCTGAAGTTCAGGGTGCGTTTCACTTCTGGCCTTCACATCCGCAGCAGCGGTCACACAGTGGATGGAGACTTGAACCGACTACTCGAATTCATCAAAATGAACCGAAACCAGGAAAGTGTGGCTCTGATTCGAAGACCCACCTCTCGGTCGGAGTTCTCTCCATtttccagcagagggcagtgtgaaCACGGCCCCCCCAATGCAGCCCCGACAAACTGAACCCCGTGTGTGCGATCGCCTTGCAGTTGATACGACCCTAATTAACCCACCCGAAGTAGCTCTCCATGATAAACTAGTGTGTTAACCACGACCACCGCTGCTCGGTGTTTAGGTTACGAGTTAATCTTTCATTGTGCCGTACCTGCCGCACtgaattgatttgattgattgaaactGTCTTCTTCACGTGCCTATAAATTGGTAAAGATCATGTTAAACCTGCCTAGGTTAGCCGATGATGCCCTGAATGACTctgatgcagatttttttttaaggaagacCCCGGGTTTAGACGCCTGCAGGGGGCCTCAGCGCTCAGTGCAGGAGGTCGGACACTCCGGGACCCCCTTGTCACTGTCTGCACTCTTCTGTGAGTTGGGTTTGTTGGTGTTGGACACAGAGTATGAGAATCCTTTGCCAAGAACACTTTCTTTTCCCTCTCAGATTTTGTAGAAATGGTTTCAGTAGCAttaaccaccccccacccccctccctccaaCACAATTATCCGCCATTGTTGTTACTTTGGGCGGCTCTTGTCATTTTCATCTTATTTGAGATCGTTTGCTGGTTTCCGAGCAAAACCCA

Function

GO: NA

KEGG:

id description
K23343 CCDC22; coiled-coil domain-containing protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72524 lncRNA upstream 208683 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 367024 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 376534 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 409984 42432920 ~ 42435152 (+) False G57964
TU72466 lncRNA upstream 410012 42432877 ~ 42435124 (+) True G57964
TU72671 lncRNA downstream 81027 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 149621 43006601 ~ 43010002 (+) False G58148
TU72699 lncRNA downstream 149644 43006624 ~ 43010050 (+) True G58148
TU72734 lncRNA downstream 355730 43212710 ~ 43213028 (+) True G58178
TU72753 lncRNA downstream 392423 43249403 ~ 43249641 (+) True G58195
AMCG00009617 mRNA upstream 122527 42707757 ~ 42722609 (+) True AMCG00009617
AMCG00009613 mRNA upstream 156683 42675228 ~ 42688453 (+) True AMCG00009613
AMCG00009614 mRNA upstream 179705 42663394 ~ 42665431 (+) True AMCG00009614
AMCG00009607 mRNA upstream 195857 42642193 ~ 42649279 (+) True AMCG00009607
AMCG00009611 mRNA upstream 211498 42633435 ~ 42633638 (+) True AMCG00009611
AMCG00009620 mRNA downstream 5423 42862403 ~ 42862624 (+) True AMCG00009620
AMCG00009619 mRNA downstream 5716 42862696 ~ 42886719 (+) True AMCG00009619
AMCG00009625 mRNA downstream 30128 42887108 ~ 42888491 (+) True AMCG00009625
AMCG00009627 mRNA downstream 34718 42891698 ~ 42913492 (+) True AMCG00009627
AMCG00009628 mRNA downstream 57800 42914780 ~ 42927057 (+) True AMCG00009628
TU72303 other upstream 766895 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1850477 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2740188 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2895936 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3408141 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1075972 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1529517 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1710385 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1727582 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1775770 44632750 ~ 44651967 (+) True G58600

Expression Profile