RNA id: AMCG00009620



Basic Information


Item Value
RNA id AMCG00009620
length 222
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00009620
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42862403 ~ 42862624 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGGAGATCATGACGTCACCTCACACTCTCTTTGGCGGTCTGGGCGGGTCTAGGGGAGATCTGGAGAGACAAGGACGAGAGCCAATAGCTATCGAGAGGCCCTTCCACCCGGCCAATGGGGAAGGGCGAGGCGGAGTGAGGGGCGGGCGCTGCGCCTCTGTGTCTGCCGTTGGGCGCGCTAGGAATTTCAAACATTTGGACGTCAGGCGGAGCGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72524 lncRNA upstream 225950 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 384291 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 393801 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 427251 42432920 ~ 42435152 (+) False G57964
TU72466 lncRNA upstream 427279 42432877 ~ 42435124 (+) True G57964
TU72671 lncRNA downstream 75383 42938007 ~ 42938874 (+) True G58123
TU72700 lncRNA downstream 143977 43006601 ~ 43010002 (+) False G58148
TU72699 lncRNA downstream 144000 43006624 ~ 43010050 (+) True G58148
TU72734 lncRNA downstream 350086 43212710 ~ 43213028 (+) True G58178
TU72753 lncRNA downstream 386779 43249403 ~ 43249641 (+) True G58195
AMCG00009618 mRNA upstream 5423 42845136 ~ 42856980 (+) True AMCG00009618
AMCG00009617 mRNA upstream 139794 42707757 ~ 42722609 (+) True AMCG00009617
AMCG00009613 mRNA upstream 173950 42675228 ~ 42688453 (+) True AMCG00009613
AMCG00009614 mRNA upstream 196972 42663394 ~ 42665431 (+) True AMCG00009614
AMCG00009607 mRNA upstream 213124 42642193 ~ 42649279 (+) True AMCG00009607
AMCG00009619 mRNA downstream 72 42862696 ~ 42886719 (+) True AMCG00009619
AMCG00009625 mRNA downstream 24484 42887108 ~ 42888491 (+) True AMCG00009625
AMCG00009627 mRNA downstream 29074 42891698 ~ 42913492 (+) True AMCG00009627
AMCG00009628 mRNA downstream 52156 42914780 ~ 42927057 (+) True AMCG00009628
AMCG00009626 mRNA downstream 98343 42960967 ~ 42972378 (+) True AMCG00009626
TU72303 other upstream 784162 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1867744 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2757455 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2913203 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3425408 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1070328 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1523873 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1704741 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1721938 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1770126 44632750 ~ 44651967 (+) True G58600

Expression Profile