RNA id: AMCG00009621


Basic Information

Item Value
RNA id AMCG00009621
length 3145
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00009621
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42799045 ~ 42811220 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTACCGCACACTCctcctttttgcttttttcaggGAGGGGAAGCGGATCCTGGCCTGATTTTTCTGGGGGGGTCTTATTTACTCAGCCTGGGGCGGGAGAGCCCCCCAACTTTGTGTCAATTTATTTATCCTTTCCTCACCTCCAGAGAGGGATAGGAGCGGCACCATGAGTCGAGCGTCCAAGGTGTCTAAGACCCAGGAGAACAGCCCCAGCTCTCTCTTGAGTGTGCAGGAGAACGAGCGGGTGTTCGAGCTGCTGGGGCGGAAATGCATGACCCTGGCCTCCACCGTGGTCCAGCTCTACATGGCCCTCCCAAACAGCAGCAACCGCTGGAGCCTGCAGCACTGCGGAGTAATCTGCTTCGTCAAGGACAACCCCAAGAGGTCCTACTTCATCCGTCTGTATGACATCAAGGAGGGCAAAATGATCTGGGAACAGGAGTTGTACAACCAGTTCATATACCTGACGCCAACACCGTACTTCCACACCTTTCCTGCAGATgatTGTCAGGTGGGGCTGAATTTCGCAGATGAGTTTGAGGCCAACAATTTCCAGAACCATTTGGAGGACAAGATCAACCAAAGACTGAACCGCCAAGAGAAAAGACAGCTTCCTCCACCACCCTCAGGAGATGACAGGAGAGGTCTACCGCCACTGCCACCCCCCAACGGCCCGGCTCCCTCTCCGGGCGGCCCAAGCCCCTATCAAATGGCCACAGTGGACATCCAGAACCCGGACATCCTGTCGTCTCGGTACCGCTCCACCCCCATGCCTGCTCCCATGCCCGCTTCGTTGGACAAGGGCAAGAAGAGcaagaagaacaacaagaagAAGGGGCCCAAGCTGACAAAGGCAGACATCGGAGCGCCCAGTAGCTTTAAACATGTAACACACGTTGGATGGGATCCCAACACTGGCTTTGATATGAATAATTTGGACCCAGATCTGAAGAACCTGTTCGCCCGAGCCGGGATTAGTGAAGCGGAGCTGACGGACGCCGAGACCTCCAAACTGATCAACGACTTCATTGAGCAGTCGGGGGGGCTGGAGGCCGTCAAACAGGAAATGAGGAGACAAGACCCTggtgcccccccacctcctccccccAGCCGCCAGGGCCCCCTGCCTCCCATCCCCTCCTCCAGCCTGGCTCCACCGCCCCCCCGGGGCCGCAGTGGGCCCTTGCCGCCCATCCCAGGACAGCCTCAGCGCGGACCCCCCTCCCGCAGCCCCGCGCCCCCCCCCAACCGGGGcatgccccctccccctcccccctccggCCGAAGCGGCGGAcctccccccccgccccctccgtCCTTCTCCCAGCCCGCTCCGCCCCCCAGCCAGCACCGCTCCGCCGGGCCGCCGCCGCCACCGGGGCATGCagggatggggggagggggaggtggaCCCCCGCCACCACCGCCGCCTCCTCCACCGCCACCCCCCTGTGCTGGCCCCCCGCCCCCGTCCCAGCCCGGCCCTCCCCGGCCCCAGAGTGGTGCCGCGCCCCCTCCCACTCCCAGCGGGGGCGGAAGAGGAGCCTTGCTGGACCAGATCCGACAGGGAAAGAAGCTCAAAAACGTCCCAGACAGCACGGAGCCCCTCTCTCCATCTTCGAGCGAGTCCAGCGAGGGGATAGTGGGCGCTCTCATGATGGTCATGCAGAAGAGAAGCAAGGTCATCCACTCCTCCGACGAAGGAGACGACGACGCGGGAGATGATGACGACGACGACGAATGGGACGACTGAGCTTTCATTCCAACTTTTCAACTTCCCTTGTCCTGTCCTAACCGTGTCTTACTGTGCCTTCATTGACACccgggggtggggaggggggatgatcaatataaaaataaaacaccaatgaaacaaatgaaagggGTGGCTTTTGCGGGACACTGGGGTCCGAGAGGAATCACGTGGAGATGCCCTCCGCCAGATATGAATTAGATACGCCAAATTAACAGGAGTCAACAGGatgataaaaaaggaaacacattCGTTCATCAGGCACCTGCGTGACCCCTGGTATGATCCGTTACAGACAGTGCTTTTGGTGGAATGATGTAAGCCGACCAAACGCTGTCCCTTTCCTGCATCGCTTTCCCCCTCACGTGTTGCGTTCACAATGTGTCAGAGCATTTCAAAGGCATCCGGCTGCTCACATGACCCCCCAGCCAGACGAGGACGACACAGCCCACACCCCGACTGCTTCCTCACTCTGTTACTCATAAACGTAGATACTGATTGGTCAATCAAGCGAGTGATCACCTCGGTTCACAGGTTACGGGGTTCAGAGGTCAGAATACCCCACCGCAGCTATAGCCCCAGCCTTGCTCCTTTATCACACACTTCACATCTATTTGCCAGCTGGTCACCCACCTGCAGCTTAATATCAAGTAAAGTGTGGGAGATGTATTATTCCAGGGGTGTTCTGCTTTGGTAGACTTTGAACTAGGATCTCGGGTCCTGAGAGGGTCCCCACAGAAGCACACAATTCGGAGACACACAGGTAAATGAAACTATACTGTTCATTAAAATGCCTGGACTGAGCTTCTTGAAGGACCCGTCTCCCTGTGGTACTGCTATTAGTATTTATTGTTCATGTGGACATTACAACTACTGTGAGTCTTTTATGCCATTTTAAACTAGAAAGGATCACGGTTGGAAATCCTtaaggctttttattttcacataaaatacatttttattacaccACAGggttgtttgattttgttgtgtATACTCTGTAGAAACATTGTTGACTTTTCTGTCAGctgcaatacagtataaaagtgGTAATGTAAACTGCAAATTGAGCGTCATCTGTCCAGGCCCTGAGACATGTACCTGTACATATTACCTGCTTAAtctgtgtaattaaacattGATGATAAATGATTTGGCAACTTTAAATGCAGCTAATACATCAAACCAAGTTACACAATGACCACAATGAGAAATGCAGTTACACTAAACTGAAATGGGAAAGAAAACGCACTTGTTTGACATGGTTTTAAATAGTTGTCATTTCCCCCTGCAGGGTACAACAGGTAACTGTCAGCTGGAGGTTTGTTTTCTCTGAGCAGCTATgcctgaaaaatatatatacttttacttccgcattagcaaaaaaaaa

Function

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0030595 leukocyte chemotaxis biological_process

KEGG:

id description
K05747 WAS; Wiskott-Aldrich syndrome protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72563 lncRNA downstream 101912 42696897 ~ 42697133 (-) True G58039
TU72547 lncRNA downstream 125338 42648850 ~ 42673707 (-) False G58025
TU72510 lncRNA downstream 258932 42539439 ~ 42540113 (-) True G57998
TU72500 lncRNA downstream 320933 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 330286 42468185 ~ 42468759 (-) True G57982
TU72703 lncRNA upstream 195381 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 195381 43006601 ~ 43010065 (-) False G58149
TU72810 lncRNA upstream 575963 43387183 ~ 43387918 (-) True G58246
TU72857 lncRNA upstream 664613 43475833 ~ 43476088 (-) True G58277
TU72932 lncRNA upstream 720215 43531435 ~ 43547585 (-) True G58336
AMCG00009622 mRNA downstream 1582 42791295 ~ 42797463 (-) True AMCG00009622
AMCG00009615 mRNA downstream 59221 42722627 ~ 42739824 (-) True AMCG00009615
AMCG00009616 mRNA downstream 95843 42690708 ~ 42703202 (-) True AMCG00009616
AMCG00009612 mRNA downstream 191397 42600098 ~ 42607648 (-) True AMCG00009612
AMCG00009602 mRNA downstream 251822 42545628 ~ 42547223 (-) True AMCG00009602
AMCG00009624 mRNA upstream 1824 42813044 ~ 42836293 (-) True AMCG00009624
AMCG00009623 mRNA upstream 46583 42857803 ~ 42863632 (-) True AMCG00009623
AMCG00009630 mRNA upstream 116356 42927576 ~ 42931214 (-) True AMCG00009630
AMCG00009629 mRNA upstream 121897 42933117 ~ 42942679 (-) True AMCG00009629
AMCG00009637 mRNA upstream 406528 43217748 ~ 43219999 (-) True AMCG00009637
TU72548 other downstream 125338 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 2641574 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3961481 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4216225 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5578969 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 671201 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1178291 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1697033 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1730674 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1754849 44566069 ~ 44566834 (-) True G58589

Expression Profile