RNA id: AMCG00009624


Basic Information

Item Value
RNA id AMCG00009624
length 3785
RNA type mRNA
GC content 0.47
exon number 13
gene id AMCG00009624
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42813044 ~ 42836293 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGAGCTTAGCGCTTAAGCAGGATAAGTAAAACTCATTGACTGGCTGTATGtcaacacagcagcagtaaGGGGACAGTGGATTTTAACAGGAAGGGTTGGTGCATTTCTGTGTCTTttctaccccccacccccccccgcAGCAGACGGCCCCCGGTGGGAAACAAGGAGCAGGTCCACTCGATGAGGATCCGCTCTGCAACCCCAAAGGATCTCGAGGAGAACGTGGCCGGTGTGGGGATTGCTCGTCTGCTTGTTCTGCTGAGGTGCCTCTAATTTGCCAACCGGTGCCAACATGGAGCTGGAGAAGCTCTCTGGTGACGACACGGAAGGCATGATGCCCAATGGGAACCATGTGGATGAGCTGGGCCCCGAGAAGGTCACCCTGGAAGACGGGTACGATGGACCCGAAGAAGCCGAGACAGAACGGGAAGAGTTCTTGCCGCACAAAAGCGATGGGAAAGCGCAGCCACAGTTTACAGATTTCGAAGGGAAAACATCATTCGGGATGTCTGTCTTCAACCTGAGCAACGCTATCATGGGTAGTGGAATCCTGGGGCTGGCATATGCCATGTCCAACACTGGCATCATCATGTTTCTCATCTTATTGACATTTATCGCCATCCTGTCGGCGTACTCCATCCACCTGCTGCTGAAGAGTGCAGGCGTTGTAGGAATCCGTGCCTACGAGCAGCTGGGCAAGAGAGCCTTTGGGAAACCAGGGAAAGTGCTGGCAGCTGCAATTATCTGCATGCACAACATTGGAGCCATGTCCAGCTACCTCTTCATTGTCAAGTACGAGCTGCCCTTGGTCATTCAAACCTTCCTGGGCAAAACCGGGAACACGGGCAATGGGATCATTAGCAGAGCAATGGGATTAGATGACTGTGACGGGGATTATAACAGGTACTTGGGCTATACCAGCGGATTTTCCCTGACCTGCATGGTGTTCTTCCTGTTCTCGACGGTCTACACTATTCCCATCCTGGCATTTGCTTTCGTGTGTCACCCAGAGGTGCTGCCCATCTACACCGAGCTGCGCAGTAAAGTGGACCCCTTGGACACGCTGATCCTGTGTGTGCGGCTGGCTGTGCTGGTGGCCGTCACTCTCACTGTTCCTGTGGTCCTTTTCCCGGTAAGACACAAATCCGCTGCAGCTCAGCCCGACACGCCAGCTTGGTTGACTGAGTGCAATGAATGTGCCACATCTGCTCCCAGTCTCATCTTCATCCTCCCGGGAAGCTTCTACGTGCGCATCGTCCCCAACGAAAGAGAGCCGCTGAGGTCGAGACCCAAGATCCAGGCGATCTGTTTTGCAGTAGTTGGTGTCATATTCATGGTGATGAGCACCTCCTTCATCATTTCAGACTGGGTGACAGGGGAGAAAAACAGTGGGGGTGGACACTAAACCTACAGCCCCCGTCCAGGGggtaaacaacaaaaacaacaccaaaaataAGAGACAAACGTCGAACACATCAACCTCCTTCCttctatccctccctccctccctttcctcCCTCCAGCCCGAGCTTGCTGAACACAGACCCGTTACTGAATACCGTGCAGCGAGAGCAAACAAAACCAGGGCTGGGTCCCCTTGAGCTTCCTCTAGCCCCTACACCCCAAGAGAAGCAAGACTGGTTTGCTATCCCCCTTTTTTGTTCGGCTAGAGGATGCCTAAACTCCTCACCGAAGAGTCGCATTTCACTGAGGAAGGCCGTGCTTTCCGAGGCTGGCGCGAGAGAACAGAAAACCTTCTATTTCAGCGGGTCAAGAAtccacatacataataatgcTCAATTCCCGAGTATACGTCATTGCCATGCTTTGGGATTTCCAGGTTGCTGCCAATCGGGTTAAGTGTTTCCCCCAGTACTGATGACACACCGGTAGGCAGAAATAACCTTGTCCGACAACAAAACCAAGAATCCACAGCGAGTGTTTTTTCGAAAATGACATCATATACGTCCATTTAGTTTAGGAACAGCCTACACCCCCACCCACAAATCCCCTCCCACCTCCTGACATCGCAGGATCACAGATGTAACAGAATCTGACTTCTCGTCACGGAAAACCAATTAACACAGAAGCtaccatttttaattatgttttctcGGCATGACAAGTAGGCTGTCCTTCCCAACCCACCtggccaaacacacacacacacacactaacagtTCCTGTGGCTCAAAATTGCTGCAAATAAGAGTAATAAGAAACTCCAAATGTTAGAAAATGCCAACAGGGTTTCAGCGACCACTTGGGGCATGTCTCTGAATACTCAAATCCATGGCTTCCTGCAGGAAATTCAGTGGGGTGAACGGTATCCAGAGCAAACCACATTCCCCGGCTGATTTTCCAAAGTCTCCTGCTCCACAGAAAGAGGTCTTGAGCACATCCTGAAAGAAACTGTTCAAAATTCAAGTCACAGATCTTGTATTGGACCAACATGAGTCTACTTTTCCCACTTCACCCTGGGTTTGGAGAGCAAGTTCAAAAAGCAGGGAGAGCTGGGAGTATAAATCTTCACAGTAATGTTGCTCTAGAGGAAATTTCCGGCAGGATTTTCATCACAAGCAGTAAATCACAGTCAGATCCAATTCAGCCCATATCTATTTGAAATGCACCAATCACTAATGCCTCCAATCTACCAGTGCTCTCATGTACAAGGGCCGTGTTGTTCTAGAAAAGGAATCCAACGCTGTCCTTTTCTGAggatgaaaaacattttccttaataaggacaaaaataaaagataactAATATCATTATGGCACTCCGAtatttatcatgtatttattatgtggTGAATaacttataaataaatcaaacgaATGATAAAAGTAAAGAATCAGCAGAGCCCATGAGCCCGTCACAGCACATACATTTAGAGTACCtcagtggtttatttttacagtCAGTGGCCATCTATACATGCAGCCAACACAGTGAGAAAATTGTGCCATCACAGAATGCAGTATTTGATTGGTCCACATGCAGCCAATGGGAAGACTTGAGCCTTCCTATTGGCTACCATGGATAGCATTACCTTTAATCCCCTCAATCCTGTCATCCTTTTActtgggtttttattttatgtcttaaGTTGTTTTGACAGCGCAGTGTATTTCTGAAAGTATTTCTGATGTTGCTCTTGTTCCTCATGTGGCAAGATAACATTCATTGCAACCTTTAGTACACCATCCACAGATGAACTGGTCACCCTTTTCACAAACCCTTCTGCTGCCCCCCAGCCCCCAATCCCTTCCAACATCTATCAAATCACAATATATCTGTTCAGTGAATGAGCCCAAATAGTATTACCGATCTGACCCCTATGGAGAGAGACGGCTACCGATACAACCAAAGTGGATGAACCATTGGGAtcgttttattgtatttatttttttaaagggggtggggggaggggggacggGGCAGAATGTAAGTATGtcaacaaacttttttttttgtgtttaatttaattgaaattaaggTGAGGGTATGCGTGCAGGGGTTTGGTGCAAGACTATCCTCATTCTTTGGAGTCAAGGCAAAATTAAAGGGCAGGAATTGGAAAGACTTGGAGTAACATCCATGTAAAACTAACACAGCAAAACTAAAATCTTGAGAAAAGCTGTGAACGTGTATCTGTACGCTcttgtatataatgttttgaaaGCCTATTTGAGGCGGCCGTGTACTGTCCTCCAATGAAAGGCACCTTTTCAAGAACTGGGAGGTTGTTCAGATATTAATAAAGACAAATGGGAGACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72563 lncRNA downstream 115911 42696897 ~ 42697133 (-) True G58039
TU72547 lncRNA downstream 139337 42648850 ~ 42673707 (-) False G58025
TU72510 lncRNA downstream 272931 42539439 ~ 42540113 (-) True G57998
TU72500 lncRNA downstream 334932 42477721 ~ 42478112 (-) True G57988
TU72494 lncRNA downstream 344285 42468185 ~ 42468759 (-) True G57982
TU72703 lncRNA upstream 170308 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA upstream 170308 43006601 ~ 43010065 (-) False G58149
TU72810 lncRNA upstream 550890 43387183 ~ 43387918 (-) True G58246
TU72857 lncRNA upstream 639540 43475833 ~ 43476088 (-) True G58277
TU72932 lncRNA upstream 695142 43531435 ~ 43547585 (-) True G58336
AMCG00009621 mRNA downstream 1824 42799045 ~ 42811220 (-) True AMCG00009621
AMCG00009622 mRNA downstream 15581 42791295 ~ 42797463 (-) True AMCG00009622
AMCG00009615 mRNA downstream 73220 42722627 ~ 42739824 (-) True AMCG00009615
AMCG00009616 mRNA downstream 109842 42690708 ~ 42703202 (-) True AMCG00009616
AMCG00009612 mRNA downstream 205396 42600098 ~ 42607648 (-) True AMCG00009612
AMCG00009623 mRNA upstream 21510 42857803 ~ 42863632 (-) True AMCG00009623
AMCG00009630 mRNA upstream 91283 42927576 ~ 42931214 (-) True AMCG00009630
AMCG00009629 mRNA upstream 96824 42933117 ~ 42942679 (-) True AMCG00009629
AMCG00009637 mRNA upstream 381455 43217748 ~ 43219999 (-) True AMCG00009637
AMCG00009638 mRNA upstream 442250 43278543 ~ 43286068 (-) True AMCG00009638
TU72548 other downstream 139337 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 2655573 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 3975480 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4230224 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 5592968 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 646128 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 1153218 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1671960 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1705601 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1729776 44566069 ~ 44566834 (-) True G58589

Expression Profile