RNA id: AMCG00009626


Basic Information

Item Value
RNA id AMCG00009626
length 4650
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00009626
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42960967 ~ 42972378 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGGATTGGCTGTGGCCTGACGTCACTCAGCCGGCTTCCCCGACACCGGATGTGGCGGAGAAGCTGTCTTATTTATTTGGGTTTCGGCTGCTGTGGGGCTGCTGAGCTGGACGGGATTCATCGCCCCGTCTTCGTATTTTCGCCTCTTTTGGTGACATTTATAAGCGACACAACTTTTTTAGgcgtttaatttatttatgcatgtatttatttcgcAGTTAGTGCTGTCGGACTGTATATGAGTTGGTCGTGCAGCTCAGGCGAGGGCGCGTTGCTTCCCCACTAGGCCACGATGAGAGGAAAGCCGCTGCTGCGGGCCGGCGCATCTGTAAACCCGCTTAAACACGCCGTCGTCCTCGGCCAGTGACGTCGCCCCCGGTGgaccgagccgagccgagccgagccgagccgagccccTTCGTGCCCTGTGCGCTGTGACGTATCGCACCGGACGGTAAACACCGACAAACGACGAGCACACGACCGGGCATTTCTCTTCATCGagTGTCTGGGATGGTGAGATGGAGAAAgagcagcgagagagagaggagactgaCGAGGTGAAGCCCTGCGAGAcagctgctccctctctcctcaaTCACCTCCCCTCCGGGGGCAGGGACAGTGATGCGGGGGAGGACACGGCGGAGTGGGGAGGAGACGGGCTGGAGATCGGTGTCTCGGATGGGCCGGTTGAGCTGGGCTCCACACAGGGCCGGGAACAAGGACAGCAGCCCCAATCtcaaccagaaccagaactggCGTCTGAGCTGTTGCCTGATGGGGAAACTGGGGACAGCCAGACGGCAGAGgtgcaggagggggagggagccgaGTATTCCAACGTGGAAGACACCCTGAACTGCAGGGAGGAGGATCTAGTCGACCATGAAGACagagaagatgatgatgatgaagaagaggAGCAGCAGCCAGACCAGCTCTCGGACTCGGCCTCGGCCTCCACTGACAACACCCTGGAGGACTCGAGCGAGTTCCTGGGGCCGCGGCCGGTGACCGTGCTGGCCGGGGGCTCACTGGAGGAGGTGGACGGTGGGATCGGCGGGGTCCCCGGGGTGTGTTCCCCGCTCTCCGAGCCTGGCAGCCCCCCACCATCCTCCCTGACGCACCGCGACGAGGACGTGACGGCCGAGAGCTGGCGGCAGCACCGCAAGCACGTGTTCGTCCTGAGTGAGGCGGGCAAGCCCATCTACTCGCGATACGGCAACGAGGAGGCGCTCTCGTCCACTATGGGCGTCATGATGGCGCTGGTGTCGTTCGTGCAGAGCGGGGACAACGCTATCCGCTCCATCTACTCCGACGATCACAAGGTGGTGTTCATGCAGCAGGGCCcactggtgctggtgctggtgtcCCGCGGCCGCCAGTCGGAGCAGCAGCTGCGCCAGGAGCTCATGTACGTCTACTACCAGATCGTCAGCATGCTGACCCAGGCCAGCATTGCGCGCATCTTCGAGCGCAAGAAGAACTACGACCTGCGGCGGCTGCTGGCCGGCTCCGAGAAGATCCTGGACGGCCTGCTCAACCTGGTGGAGTCGGACCCCAGCTTCCTGTTGGCCGCTGTGCACTGCCTGCCCCTGCCCTCCGCCCTGCGTGACGCCCTGAGCCAGATCCTGCAGAAGGCCATCACGCCCAACCTGGTCTTCTCCATCCTCATCGCCAAGAACCAGCTGCTGACCATCGTGCAGGAGAAGACGGTGATCGAGGACACGCGGCTCGAGCCGGCCGACCTGCACCTGCTGCTCAACCTCGTCGGCGCCTCCTCTGCCTTCCAGGCCGGCGAGATCTGGACGCCCATCTGCCTGCCGCTCTTCAACCCCGACTGCTACTTCTACGCCTACATCTCGTACCTGGACCCGCCCAGCTGCACTGTctgcctgctgctgctctcCACCGACAAGGAGGCCTTCTACGCCGTGGCCGATTGCAAGCGCCGCATCGAGGAGGGCATGCGGACGCAGAACGCCCTGCCGGCCATCGCGGGCGCCCAGCCCTACAGCGTGGTGCAGGTGGGCGTCTCGGACCTGCGCCACTTCATGTACAAGCCCTTCGATGTGCCCGACAACCACCGGCAGCTCACGCAGTTCACCAGCCCCGAGATGGAGGCCCCGTACGGCACGGAGGAGGAGCGGCACCGGCTGCTCGACCTCTACCGCTACCTGCACAGCCGCTTGCACAGCGCCTCGCGCCCCCTCAAGCTCATCTACCACGTGGCGGAGAGGGAGACGCTGCTCGCCTGGgtgacCAGTAAGTTTGAGCTGTACACCTGCTTCAGCCCCCTGGTGACCAAGGCCTCGGCCATCAACGCCATCACCAAGCTGCTACGCTGGATCAAGAAGGAGGAGGACCGGCTCTTCATCCGCTACCCACCCAAATACTCCACCACCCCCAACCCCAGCAAGAGCTCGCGTGGGGGCAAAGGGGGCGCCGCCGGGCAGGAGGCCACCGGCAACGGCTTCCTGGCCCTCCCCTAGGACCCTCCCGCCTCCGAGACCACGTCGCCCGATGTCCCGCTCGCAGCCGCGCTCGCCGACTTTGTTTTCCTCGTGGTTGTTCCTCCCGAAGCGGATGTTCTTATTTTGCGAACCTGTCCTGTTAGTTGTTGTAATCGTGAGAGATGACACGGCCCCATTCGAGTGGAGTTAAACGCAAACCAATCTACGTCTTTTCTAGTGAAAGGGTTGATATTTAGCGAGCTGGTTGCAAATTAAAGCTCTGATTTAGGCTGGTGAGTCACGTGGTCTTTGAGTGTTTGATAATGGGATGTCCGTATTTtggtgctttgtgtttttttttttctctccattgtCCTGGCTGACCATTGTAGGGGACAATGTGACAATGAAGGGTGCATGTGTACCAGAACTGGAATTGCTGACCCTAATAGTGACCTGGGGTTTAATGTCTTTGATTCTGGGTCAGCTAATCCGCTAGAGGAACCGGTCTCCCCTGTGCGACTCGACTAACCAACGGGATCGGACATCTTTTTAATGCAGAATTGCTTTTAGATTCTCCACAGAGGtcgtgtgtgcgagtgtgtgtgtttgaactgTTACATAGTTTCCAACCGGAGGACACGGCTGAACCTGAATTCTTGCCCGAACTTGAAACTTTTCAGTTTCTCTACAAATTCAGCGATTTTTCCACTGAGGAGGACGTCGTTATGATTATTTTGAAGACAATCTTGGGGACTTGACCTTTTTAAGCAGATCTGACGTTTGCCTGTGGAGCTCCATTGTTGAAATAAATTGCACATGTTACCAAACGCACCCTCCCCACCTTGCGTTGTGTTCTGTCACCATGAGAATCGGGAGCTTTCTCGGCCGGCGGTGCTTTTTGGTGCCCGTGCTTCAGTGGGGCCCCGAACAGCTCGCTCTGTGGGCCTGATGGGCTGATTGAATGTATTAAGCATTGGGCTCCGCACTGGGTGACAAACAGGTTTCCCTCTTGGAGCTGGGGGGTGCCACACAATGGTAggagcagaaaaataaataagacggTCACCAGTATTAGAAAAGCTCTACCTTTAGAAGTGTATGAATGGTCGCACAATTTTGTTGATTGTTTATATTGAATAACTGTTACATAGCTCTGTTGCAGGCTGGGTGTGTGAAtagttttaaattcagaatgTTGGTAGTGTGGGGTTTCCCAACATTCTCTTTGTTAATGGGGCTCAGGTACAAGGAAGGACAAGTCTATGGGTGTTGAACTGGTCCTGCTGCTGCGTGTGAGCGAGTTCCAGTCCAACAAAGCATCGATGCATTGCTAGGGACGCTTCTGTGGTacaaaaagacctagaagatcaTCGCAGTGTGGGTGGGGATGTTCTCGGACTGTGTTTTCATATCGCTGTTTGAATTCAAGACCTGGTCTTGTATCGTGCACGTGGAATTGAAGTGTCACCCTTGTGTGCTACGGTGTTACTCCTTTACGACGATGGAGGGTGGGAATGGATGGAGGAAAAGTTGCTTTCGTTGCATGGACAATATGGCCCCCAGGCCAGGCCAGGCCTTGAGAATGGTGTGATATTGTGAGTCGGTGTGTAATTGGCGGTTCTTGAATATGTTgggtgttttaaatgtgtgtggtgCAGTCAGTGACATTTTTGTAGAGGAATGATTTATCTGACTAATGAATGATGGATAATGACGATAATAaccatgatttaaaatatggacCATCACGTGGGTCTGAAACCAATGTGATAGTGCGGAGCTTCGAGAATGTACCTGCTGTCTTGGCTTCTTCTCAATTAACTTGTAAACCGAGAGGCAGTAAATTTGGATATATTTTTGCTTGTCCGATCTGGGTTCACTGTCAGGACTGGGGTAAAGATAAACTCCCCAGAGTTTAATGTCAAGGCCAGTGCATCTGCTCTTACTTTAGCCGTCTCCGTGCTTTGggtgattttcttttccttccacACAGCCTTACTTGTTCCCCAGTGGCTGGGGTTTAAGGCTGACTTAACAAAACTGGAAGTCAATGTTTTGTATCTGCACTTTGAACTCAAACGTTCTGGGCTCTgggaatttaaaaatgtttttgtttactgaCAAAGGGGGTTATGAAAGTACGACTGTggattttgacttttttttttttattaaaagatgaaaagttac

Function

GO: NA

KEGG:

id description
K20195 MON1; vacuolar fusion protein MON1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72671 lncRNA upstream 22093 42938007 ~ 42938874 (+) True G58123
TU72524 lncRNA upstream 324514 42629539 ~ 42636453 (+) True G58008
TU72499 lncRNA upstream 482855 42477715 ~ 42478112 (+) True G57987
TU72493 lncRNA upstream 492365 42468308 ~ 42468602 (+) True G57981
TU72470 lncRNA upstream 525815 42432920 ~ 42435152 (+) False G57964
TU72700 lncRNA downstream 34223 43006601 ~ 43010002 (+) False G58148
TU72699 lncRNA downstream 34246 43006624 ~ 43010050 (+) True G58148
TU72734 lncRNA downstream 240332 43212710 ~ 43213028 (+) True G58178
TU72753 lncRNA downstream 277025 43249403 ~ 43249641 (+) True G58195
TU72776 lncRNA downstream 337482 43309860 ~ 43311062 (+) True G58215
AMCG00009628 mRNA upstream 33910 42914780 ~ 42927057 (+) True AMCG00009628
AMCG00009627 mRNA upstream 47475 42891698 ~ 42913492 (+) True AMCG00009627
AMCG00009625 mRNA upstream 72476 42887108 ~ 42888491 (+) True AMCG00009625
AMCG00009619 mRNA upstream 74248 42862696 ~ 42886719 (+) True AMCG00009619
AMCG00009620 mRNA upstream 98343 42862403 ~ 42862624 (+) True AMCG00009620
AMCG00009631 mRNA downstream 4751 42977129 ~ 43003322 (+) True AMCG00009631
AMCG00009632 mRNA downstream 78895 43051273 ~ 43052391 (+) True AMCG00009632
AMCG00009633 mRNA downstream 133101 43105479 ~ 43112950 (+) True AMCG00009633
AMCG00009636 mRNA downstream 217227 43189605 ~ 43213919 (+) True AMCG00009636
AMCG00009639 mRNA downstream 279824 43252202 ~ 43253062 (+) True AMCG00009639
TU72303 other upstream 882726 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1966308 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 2856019 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3011767 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3523972 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 960574 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1414119 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1594987 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1612184 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1660372 44632750 ~ 44651967 (+) True G58600

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_03248839_03256675.mRNA True 2236 mRNA 0.48 6 CI01000306 3248839 ~ 3257063 (+)