RNA id: AMCG00009634


Basic Information

Item Value
RNA id AMCG00009634
length 3082
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00009634
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43258520 ~ 43266899 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TtgacctgtctctctcccttcccccgCAGTGTGAAAACAGCTCCAGTCTGCCATGGCTTCATTTCTGCATCACTGCCCCTTTCTGACCACTGTGCCCAGGCCCATCCTGCGCAGAGCTGGCGTCTCCCTCTTCAACTTGGCAGATCGCTGCCCCGTCATCCTCCGTGGCCTGGCATCCTCTGCCCCCCAACAGCAGAGGGCCAGAGAGACCACGCCAGCTGGCTCCTCTCCCCAGCGCTCCCTGGCTCAGGATGCCACCCAGGCCGCCGTGTCTCTGTCCTCCAGCTGCCCCTTCGTGTCATCCCAGATTCCTGTGGTCCAAGCCAGCCCTGAGGTGCAAGAGGATGTTCGAACCTCTAATACAGGGTCTGTGAGCGCGGTGCTGAAGGGGCTCCACTCCTCCCTGAAGCAGAAGATGCAGGACCTCAGCACCAGGCCTGCCCGTCCAGAGAGTCTGCTGATCAGAGACAACATGATTGCAGCGCAGCCCAGCTTTGACTATGACCGCTTCTTCGAGGCTAAGATCATCGAGAAGAAGCAGGACCACACTTACCGAGTCTTCAAGACAGTGAACAGGAGGGTGGATGTCTTCCCCTTCGCCGAGGACTACTCCCAGACCATCCAGCAGGCCAAGCAGGTGTCTGTGTGGTGCAGCAACGACTACCTGGGCATGAGCCGCCACCCCCGCGTGCTGGACGCCATCCGTGATACCCTGGATCAGTACGGGGCCGGCGCCGGTGGCACTCGCAACATCTCCGGTACCAGTAAATTCCACGTGGACCTGGAGCGTGAACTGGCAGAGCTGCACGGCAAAGACGGGGCGCTGGTCTTCTCCTCCTGCTTCGTGGCCAACGACTCCACCCTCTTCACCCTGGCCAAGATGCTCCCAGGCTGCGAGATCTACTCGGATGCGGGGAACCATGCCTCCATGATCCAAGGCATCCGCAACAGCGGTGCCCCCCGGCACATCTTCCGCCACAACGACGCGCAACACCTGGAGCAGCTGCTCCGCAACTCTGACCCCAACACCCCCAAGATCGTGGCCTTCGAGACCGTGCACTCCATGGACGGTGCCATCTGCCCATTGGAGGAGCTGTGTGATGTGGCCCATCGCTACGGCGCTCTGACCTTTGTGGACGAGGTCCACGCCGTGGGGCTGTACGGGGCGCACGGGGCCGGTGTGGGCGAGCGGGACTCCATCATGCACAAGATCGACATCGTCTCCGGGACCCTGGGGAAGGCGTTTGGCTGCGTGGGGGGATACATCGCCAGCACCGCCGCCCTGGTGGACACGGTGCGCTCCTACGCCGCCGGCTTCATCTTCACCACCTCCCTGCCGCCCATGGTGCTGGCTGGGGCTCTGGAGTCGGTCAGGGTGCTGAAGGGGTCCGAGGGCCAGGCTCTGCGCCGGGCCCACCAGAGGAACGTCAAGCACATGAGACAGCTGCTCCTGGACGCCGGGCTGCCTGTCATCAACTGCCCCAGCCACATCATCCCCATCCGGgtggGGAACGCAGAGCAGAACTCCCGGGTGTGTGACTTGCTCCTGGAGAGACATGACATTTACGTCCAGGCTATCAACTACCCCACCGTGCCCCGCGGAGAGGAGCTGCTGCGCCTGGCCCCCTCGCCACACCATTCCCCCGCCATGATGGACTATTTCGTGGAGAAACTGGTGGAGTCCTGGCAGGAGGTGGGGCTGCCCCTGAGCCGCCCGATGGCTGCTGCCTGCAACTTCTGTGATCGCCCGCTGCACTTCGACCTGATGAGCGAATGGGAGAAGTCCTACTTCGGCAACATGGAGCCGCGGTACATCACCGTGTGTGGCTGAGCCCGGAGAGAGGCGGCAGGACGTGGCCGTCAGCAGCGCTTGTCAGAATGATCTACTGTCTCTTACCTGcacatgggggtggggggaacaAACCTGCAAATATGGCTTATTTTAGATTGTGTCCTATGAGAAATTAGTTACCTGTTAAAGGGCAAACCTGAATGTCTCTTCAAATGGGAAATGTGGCTAAAAATATAGCTAAGtacaaaagtatttttcctGATATTCATCCACATTCCCCTCTTTGAATATTGTAAGAAAATACGTTGACAGCTATTTTTGAgtgtataattatgttttttttctcttaaaccagctttatattattatcatcatcattattattacatattttgtatccCCTATTATCAGGTAAGGGACAATAGATAATTACTTCCCCCCACTCTTAAATAATCCTTCCTTCTTTGCACTCATTCCTCTTTCTTTACACATCCTCTGCTACTGACTCTGATACGACTGTATGACGGGGccaaagaataaatacattcctgTGGTTGattctcaaatgttttttccttgaCAGTCTCTgcccttttttttcccatttggCTTTCTGTATACATTGATCTGCTCTGTTCAGGAGCTTTAAAAATGCATCGGCATTGGGAATAAGATGTAGAAAATTTAGGAACTCATGGTTTGACGAGTGAAAATCCCGAGACCATCACTGCGTTATTTCAACACAGCGACACCTGCACTTTATGCACTTTCCAGAAGTATCTTAACAGAGTGTGTAGAGTAGTAGTAAGTTTTGCAGACTTGTGTGCCAGTGGAGTGTCAGTGTGGGCTGGCTGCCTGTGAGTTTAGCCATCATCGCCACTGTACATGCTGatgaaataatcataataggATGTCGCAGAGAAAAATGCAGACTTCCAATGTTTCAGATCTGCTAAGCTTTTCTTGTGTGTCACGTTCACAATACTGTGTAATCTGTATCTCTGAATAATACTCAAAATATCCCAATTATTAATGGAAATGATGCCAACCAAAATGGAAAATTCCATACAATACCAGTTCAGTGTGGTTTGAAAGTAAATACACTAGTCGTGGCTTTCAAACTCCAGTGCTCTATAGCATCCCTTCTCCCTGCAGGTTGATACAGGCTCTTGTAAACCACTGTCTGCTTATGTTCTGAGTGAATTGAAATGAGTCTTTCCTTTAGCATACGAGCCCCCTGCCCTCCCTGATTTAAAACAGCCCCTGAGCTTAGAAGATACATGTAGCAGC

Function

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0020027 hemoglobin metabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0003870 5-aminolevulinate synthase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00643 E2.3.1.37, ALAS; 5-aminolevulinate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72753 lncRNA upstream 8879 43249403 ~ 43249641 (+) True G58195
TU72734 lncRNA upstream 45492 43212710 ~ 43213028 (+) True G58178
TU72699 lncRNA upstream 248470 43006624 ~ 43010050 (+) True G58148
TU72700 lncRNA upstream 248518 43006601 ~ 43010002 (+) False G58148
TU72671 lncRNA upstream 319646 42938007 ~ 42938874 (+) True G58123
TU72776 lncRNA downstream 42961 43309860 ~ 43311062 (+) True G58215
TU72773 lncRNA downstream 52017 43318916 ~ 43324579 (+) True G58214
TU72836 lncRNA downstream 172500 43439399 ~ 43444317 (+) False AMCG00009647
TU72871 lncRNA downstream 411452 43678351 ~ 43680953 (+) True G58291
TU72891 lncRNA downstream 606882 43873781 ~ 43875723 (+) True G58304
AMCG00009639 mRNA upstream 5458 43252202 ~ 43253062 (+) True AMCG00009639
AMCG00009636 mRNA upstream 44601 43189605 ~ 43213919 (+) True AMCG00009636
AMCG00009633 mRNA upstream 145570 43105479 ~ 43112950 (+) True AMCG00009633
AMCG00009632 mRNA upstream 206129 43051273 ~ 43052391 (+) True AMCG00009632
AMCG00009631 mRNA upstream 255198 42977129 ~ 43003322 (+) True AMCG00009631
AMCG00009635 mRNA downstream 1028 43267927 ~ 43273372 (+) True AMCG00009635
AMCG00009640 mRNA downstream 48729 43315628 ~ 43318501 (+) True AMCG00009640
AMCG00009646 mRNA downstream 149932 43416831 ~ 43424850 (+) True AMCG00009646
AMCG00009647 mRNA downstream 170091 43436990 ~ 43444420 (+) True AMCG00009647
AMCG00009656 mRNA downstream 404870 43671769 ~ 43720150 (+) True AMCG00009656
TU72303 other upstream 1180279 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2263861 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3153572 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3309320 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 3821525 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 666053 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 1119598 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 1300466 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 1317663 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 1365851 44632750 ~ 44651967 (+) True G58600

Expression Profile