RNA id: AMCG00009638


Basic Information

Item Value
RNA id AMCG00009638
length 1311
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00009638
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43278543 ~ 43286068 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCTCAGAAATGCTCATCTGGATATTGGCACTTTTTCACACCGCAGACAATGCACAAGTCCGGCTGGTGAACGGATTCAGCAGCTGCTCAGGGAGGGTGGAGGTTTATCATGGCGGCACGTGGGGCACGGTGTGCGATGATCTCTGGGACATGGTGGACGCGAAGGTGGTGTGTCGAGAGCTGGGCTGCGGCCTCGCCACACTGGCCCCACAGAGAGCCGAGTTCGGGGAAGGATCCGGGCCCATCACACTGGATGACCTGCAGTGCACGGGGAACGAGTCGTCGCTGCTGGACTGCCCATCCCTGGGCTTCTACACCCACAACTGTATGCATGCGGAGGACGCCGGGGTCGTGTGCTCAGGCCCCAGGGTGCGACTGGTGGGCGGCTCCAGCAACTGTTCTGGGCGAGTGGAGGTGAATTATTGTGGCCTATGGGGGACGGTGTGTGATGATCTCTGGGATCTGAGGGACGGGGACGTGGTGTGCCGGGAGCTGGGCTGCGGACCGGCCAGGTGGGCCACAGACCAGGCCCACTTTGGACCGGGGCAGGGCTTCATCCTGCTGGACAACGTGCAGTGCTCGGGAAACGAGTCTTCGCTGCTGGACTGTCAACCGGGAGTCGTGGGAGTGCACAACTGCCATCACGGCGAGGACGCCGGTGTCATCTGCCAAAATGGCCGACACGTGCGACTGGTCAACGGCAACAACAGTTGCTCCGGGCGAGTGGAGGTGCACTACCGCGGTGAATGGGGGACGGTGTGTGATGACCAGTGGGACTTGGCGGACGCCCAGGTGGTGTGCAGAGAGCTGGGCTGTGGGAGGGCACTCTACGCCACCACCCAGGGCTACTTCGCACAGGGCCAGGAAAGTATCCTGCTGGACAACCTGGCCTGCACCGGGATGGAGTCCTCGCTGTTCGACTGTCCGTCCGCCAACCTGGGAGTCCACAACTGCCTGCATTCTGAAGATGCTGGGGTCATCTGCTCAGGTCTAATCTCTACTCTGGAAGACGAGTGCTCCGGCAGGGTGGAGGTGTTTCACAATGGCCTCTGGGGCACTGTGTGCGATGATCTCTGGGACATGGCGGACGCTCATGTGGTGTGCCAGGAGCTGGGCTGCGGGCCGGCTGCGTCTGCCCCCTCACAGGCAGCCTTCGGCCGTGGCACGGGTGTGATTATGCTAGACGATGTGGTCTGTACAGGACATGAGACATCCCTGCTGAACTGCAGCTCCAGGGCGCCTGGGGATCACAACTGCGATCACTCTGAAGACGCCAGTGTGACCTGCTCAAGTAGGTCCTGTAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72703 lncRNA downstream 268430 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA downstream 268478 43006601 ~ 43010065 (-) False G58149
TU72563 lncRNA downstream 581410 42696897 ~ 42697133 (-) True G58039
TU72547 lncRNA downstream 604836 42648850 ~ 42673707 (-) False G58025
TU72510 lncRNA downstream 738430 42539439 ~ 42540113 (-) True G57998
TU72810 lncRNA upstream 101115 43387183 ~ 43387918 (-) True G58246
TU72857 lncRNA upstream 189765 43475833 ~ 43476088 (-) True G58277
TU72932 lncRNA upstream 245367 43531435 ~ 43547585 (-) True G58336
TU72933 lncRNA upstream 245367 43531435 ~ 43568662 (-) False G58336
TU72977 lncRNA upstream 584286 43870354 ~ 43871117 (-) True G58374
AMCG00009637 mRNA downstream 58544 43217748 ~ 43219999 (-) True AMCG00009637
AMCG00009629 mRNA downstream 335864 42933117 ~ 42942679 (-) True AMCG00009629
AMCG00009630 mRNA downstream 347329 42927576 ~ 42931214 (-) True AMCG00009630
AMCG00009623 mRNA downstream 414911 42857803 ~ 42863632 (-) True AMCG00009623
AMCG00009624 mRNA downstream 442250 42813044 ~ 42836293 (-) True AMCG00009624
AMCG00009645 mRNA upstream 10991 43297059 ~ 43300524 (-) True AMCG00009645
AMCG00009641 mRNA upstream 32767 43318835 ~ 43331478 (-) True AMCG00009641
AMCG00009643 mRNA upstream 46363 43332431 ~ 43338522 (-) True AMCG00009643
AMCG00009644 mRNA upstream 52596 43338664 ~ 43341665 (-) True AMCG00009644
AMCG00009642 mRNA upstream 59158 43345226 ~ 43373271 (-) True AMCG00009642
TU72548 other downstream 604836 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3121072 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 4440979 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4695723 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 6058467 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 196353 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 703443 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1222185 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1255826 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1280001 44566069 ~ 44566834 (-) True G58589

Expression Profile