RNA id: AMCG00009643


Basic Information

Item Value
RNA id AMCG00009643
length 2684
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00009643
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43332431 ~ 43338522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACTATGCGTTGCTCTCCGTGTGTGCTGCTCTTTAGAAATGCaaccaggaagaaaaaaaaacagaatatttgtggACATTTCTGTAGTAGTCAACTCGCACAAGTCCTCACCTGCATGGGATGGATAGAGCAGCACCATTTCTATGAGTTGCACTCAATTCATGTGTACACTGGGATAGGGCTCTGTATTGCGGAAAGTAACACTAACCTAAAAGTACTAACTGCAAGCGACGTGTTAGGCTACAGGACTGAATGCGCACACATGGGTTCGCTTCTGGACAGAAAGATGTTACATTAAATGTTGCACATTCGTTTGGCTCCGCATACCCACAGTGTACAGCCCAGCCCGGCCCGCTGCTCCACTATGCACGGCGAGGGGTCCGTACCCGGGCACAGGTCGCGCTGCCACCCGGCCAGCGCCGCCGCCAGCTGCGCGACTCCCTCCCCGCCGAGAAGCGCCTTCTCCGGCGACCAGGAAGTCATCCGAGCCGACGCGCTGCTCAAAGCCATCATGTCGGAGCTCATCGACAGCAAATTCGCCCTTTTCCAATTCAAGATGGACCAGAGCGGCCAGGAGTTGACCAGCTTGAGGCTCCGGATGGAAGTGGCCGAGAGCGAACTGAGCGCCCTGCGGGGATGCGTCCTCAGTGCGGCGGCGAAGGGTGCGCTCAAGCCGCCTGCCCTCGCTGACACCCCCGGCCTCGGCAGTGCGTCTGGCCAGCAGCGGACACAGCGGGCTTCACCACACAGCccactgaaagaaaacaacccGTGCCCCGTGTTGGCATCGCAGGATGGGCACAGACATCAGTGCCAGGATGAGGCTGTTGGAGGAGACCTGACCCCGACCTGCGGCAGCGATGACAGGCGTGTCGACAACAGCAGTCGTGCACCGCAGACGGTACCAGACTCGGACACCCAATGTGACAAGAGGGGAGAACCGTCTGTAGAAACAGAAGTAAAACCTGACTTTTCAGCCGAAGGCAAATTGGACCGCCGACAGACGAAAACCCCAGAACCGGAGTGTAGAGAGAGGAGTGGACATGAGCTAAAACCTGACCACATTAAAGTGGAGGAAGACCCCGACATGGATCTGGACGTAATAGAGCTATCCATTTCTGAATCGGACTTGGTGGACGCGATCTGTGAGCCACAGCCCGTGAATGAGAGCAGTGTAGCTGGGCAGAGCTGCACCGAGGGCTCGGTCTTTCCAGACGGGGTTCCGAATGGAGGAGCTACGGAAAACGTTCTGGATTTACGTCACAGCAATGGTGTCTGCGATGGAACTGCATACAAGGAGCCGCATCAGGATCCTGCAACTACTGCGTCACAGAGGAGTGCGATGATGTCAGCAGCAGCGGGTGATGTAacaaTGAAAACAGAGCCATTCTTGGAGCTCCCACAGTGTGAAGAACGTGAGCAAGTCCTCCCCACTCAAACAGCCAGCTGCCATGCCCCTGCCCCAGACACCGCCCCTGCCCCCCTGACAAGACAACAGTCCCCCGCGGCCACCATTAAGTTGAAACGCAACCTGAAAACCTACCAGCCCATCCCAAACTTGTCTGCCCTTCCCTTACTCCCTTCCATGATTTTACGCCCTCGGAAGGACTCGGAAGCAGAGAAAGGCTTACAACAACCTGTAGAACAAACCCAGGGTCAGGGTGAAGATGGCTTCGCCATGGACACCCCCGATCCTCCCATAAACATTCATCAGAGGTACCCCAGGGATGCCTCCCCAAACAACCTCAGTGTCCCCCAGAGCCTCAGAAGGTCCCGGGTGCCCAGTATGTCAGTGGCATCTGGTGACCTCTACATCTGCACCGAGTGTGGGAGGACCTTTAAACTCCTGGGGAACCTCAAAGCCCATCAAAGACACTGCCTATGTGGAAAAGAACAGGAGAAAGACAAGACTGTGTTAGAGAAGACCTGCGGCCTTTGTGACCACAACACAGTGTTGGGACTCTCCAGGAATGATTGTAGCACTTTTTGAATTGTCTCCTTATTTCCACTGCCAATGTGCCTCCTCTCTGCTCTGCATGGATGGACTATTTTCTCAGGTGGCTGAAAGCTGTACCACTAGCTAGCCACTTTTACTGTTGCCCTGCTGGTCATATCATATTGAAGTTCTGTCCTCTCGTGTCTTGCTCCCAAATCTGAAGGCACTTCTGAAGCCAGCTTGTGAGGCTCCCTTTGGAAAAATGTTCCCACTATAGTGAAGGTTTTGGTTCTTGACTGCGTTGAGATGaaccatttaaaatcaaataaatagtgCAGGAAAAGCTGGCAGCGGGTTGTAGAGGTAGAGTGAGGGGACTAATTGGCACTTCCAAAAAAGGGCGAGAAAGGGGAACAGTTACTGGTGATTTTCAtttgtcaataaataaaagggagAGAGGACATTGATTCGTATTATTCTGATGCACAGACCTGAGTTGACAGCATAGCAACAGCAATCCACAGTTTTAATGTGAACAAAGTAGCCTGACGTTTTTGTCCCATGTCACCAGTAAGAGAAATGTGCATGTCTGTAGGGACGGGGGAGCAGGAGCAGTTATAATAATACCTACAGCTGTAGTTATATGATTTCTAAGATTtaaccattttcattttatccTCTGCATAAAATAGGATAACATCAAAActcaaatgaatacattaccTGAATAAAATTACTTACATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72703 lncRNA downstream 322318 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA downstream 322366 43006601 ~ 43010065 (-) False G58149
TU72563 lncRNA downstream 635298 42696897 ~ 42697133 (-) True G58039
TU72547 lncRNA downstream 658724 42648850 ~ 42673707 (-) False G58025
TU72510 lncRNA downstream 792318 42539439 ~ 42540113 (-) True G57998
TU72810 lncRNA upstream 48661 43387183 ~ 43387918 (-) True G58246
TU72857 lncRNA upstream 137311 43475833 ~ 43476088 (-) True G58277
TU72932 lncRNA upstream 192913 43531435 ~ 43547585 (-) True G58336
TU72933 lncRNA upstream 192913 43531435 ~ 43568662 (-) False G58336
TU72977 lncRNA upstream 531832 43870354 ~ 43871117 (-) True G58374
AMCG00009641 mRNA downstream 953 43318835 ~ 43331478 (-) True AMCG00009641
AMCG00009645 mRNA downstream 31907 43297059 ~ 43300524 (-) True AMCG00009645
AMCG00009638 mRNA downstream 46363 43278543 ~ 43286068 (-) True AMCG00009638
AMCG00009637 mRNA downstream 112432 43217748 ~ 43219999 (-) True AMCG00009637
AMCG00009629 mRNA downstream 389752 42933117 ~ 42942679 (-) True AMCG00009629
AMCG00009644 mRNA upstream 142 43338664 ~ 43341665 (-) True AMCG00009644
AMCG00009642 mRNA upstream 6704 43345226 ~ 43373271 (-) True AMCG00009642
AMCG00009648 mRNA upstream 85383 43423905 ~ 43431555 (-) True AMCG00009648
AMCG00009649 mRNA upstream 95890 43434412 ~ 43439221 (-) True AMCG00009649
AMCG00009651 mRNA upstream 106051 43444573 ~ 43455887 (-) True AMCG00009651
TU72548 other downstream 658724 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3174960 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 4494867 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4749611 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 6112355 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 143899 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 650989 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1169731 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1203372 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1227547 44566069 ~ 44566834 (-) True G58589

Expression Profile