RNA id: AMCG00009649


Basic Information

Item Value
RNA id AMCG00009649
length 2167
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00009649
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43434412 ~ 43439221 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGAGATCCGGTGAATCATTAATCTCACTACCGAATGAGGAGTCGTTCAGACAAGCAAAGAAGGAACTGATCGAACATTGCACGGCCCCAGATCACTTACGGACAGATCTGTCTCCAAGGTTGTCTTACAACCCTAACATCCAGGAAAAACGTCTCAATCCAGTTCAACAGAGGGACAGCGTGCCCTCTCTCTGGAGTTTCCCTGGCATCGATCTAGTCCTGTGACAGACCTACAAGAGAGCCGGGGAGATGACGCGGAATGACAACTGCAACATGACGGGAGCAGAGATCCTCTTGTCTGCCGAGTTCTTCAAAGTGATTAGGAAGGAGCTGTGGTTGTTCCTGCTGCCCGGTGCAATGGCCCTCATCCTGCTGGCCTTGTTCCTGGAGGAGATGGGCTTCTTCCTGCGAAACGTGGTGTCCTCCAGACGCAGGCACCTCTATCTCTGGATCATGGGCATGTACCCGGTGTGGGGGATGATGTCCATCATCGCTCTCTATGTTCCTCGTTCCTCATCGCTTTGCAATTTCTTTGCTTCCCTGTCGAATTTGGCCTGGATGAGTGCGGCTGTTCTTCAGCTCTCTGTAGTGCGGACCATCCTCTTCTTCATCACACTGGTTCTGTGGTCCGATGAGCAGTATGACTACGGAGATGTCGACTATGTAAATCCCAACTCCTACATCAATGTTATCATCGGAGTGTCTACCTTCCTCTCCTTCTACGGCTACCTTCTATTCTACAAGGCTACCAAGAAAGCATTGCCTGGCTATGGACTACGCGTGAAGTTCATCTGCATCATCGTGGTCCTGTTCCTCTTGATCTACCACTACACGGTCATTGTGGAAATGTTCTGCATCGGTGTCTTCGCACGCCACGCATTCCGCAAGGTGGAGCCCTGCCCTGAAGTAAGCGTGTCTTCGGGGGCATCACCAGTGGGGCGGCAGAAGGAGAAGGCGGTGCAGACAGAGGATGTGTGGCCTCTGGGGGGCCGGTTCTCTGTGACGAAAGAAGATGCCTGGCCAGGCGGCGGGGGGGCCGGGGGCGCCTGGAACCACGGCTACAACAGCGACAGTGAGGACAGTTTGTGCAGGATTGAGCACGCCCCCTTGGATCGCTTCCCCTTCCCCCTCCACACCCCCGCACGGACCCTACAAGCACCTCCAGCCCCAGCCAGCCCCACTAACCCAGAGGAAACCAGGAATCCCAAGCATTCAATGGAGAATCACTCAGTGGAGCTAAACACCATGACTGTCATAGCAGAAATCAACTGCAACAGAACCAGCGAGGCTACTGTCGTGTAGTCAGGATCATCCACGTGCTTGCTCTACAGTCACCCTTGAACTCTTTCACACAGAATGGTTTCTTTAGTACTTTATAGCAGGTGAAATTCATTGCTGTTTAATTTTCCACCCTTCTTGTTCTGATTTAAGTTATATCCACTGAGGTTATTGTAGAGGAATAGACTATGTATACTAattatatctatctgtctatctatcactctctctctctttatataaatataagtaaGTGATTGagtatatatctatagataCTATAGATATAAACTATATAGTATCTATCCATTTGCCATAATTCCAGCCTGGAGGTCTCAGTATAAGCCACCACTGCAGAAATATGTTGGACATTTACAATACATAGTTTTGTGCTAGCCTAGattgcagtttttatttggggtgttaaaataaatgttcatggGGTTGAAGGTAACCTTTTCTTCGACTGTATTTATACTTGGAGTAAAGTACTAGTAAGAGCAAGTATCGAGCACAGCTGGCTAATTTCCTCCTGGGTCAGGCCAAGCAAGCAAATCAGACTGGCATTTACTATAAATGAGTGCATCAGATGGATATGTTTGAGGGGGTTTGGGGAATACAGGAGGTGTTCTGCTCAGTAAAGCAGGGGCAGTTGTATTTGCAACTGTGAGAATATTTTGGGGTggagttttttgtgttttgttctgttttgattgtttttagcAGCTATGCACTAATCTGATACATTCCATCGAATGTGGTTTTAACAGTGCTTGGTGTTTGTATTGACATTTATTCATATAAAGGTGTGATATGCATgtaatgtgaatttaaatttgGGTTGTGTTGTTAAATTATTGACATAAAGGTGATTTTATGATCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72810 lncRNA downstream 46494 43387183 ~ 43387918 (-) True G58246
TU72703 lncRNA downstream 424299 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA downstream 424347 43006601 ~ 43010065 (-) False G58149
TU72563 lncRNA downstream 737279 42696897 ~ 42697133 (-) True G58039
TU72547 lncRNA downstream 760705 42648850 ~ 42673707 (-) False G58025
TU72857 lncRNA upstream 36612 43475833 ~ 43476088 (-) True G58277
TU72932 lncRNA upstream 92214 43531435 ~ 43547585 (-) True G58336
TU72933 lncRNA upstream 92214 43531435 ~ 43568662 (-) False G58336
TU72977 lncRNA upstream 431133 43870354 ~ 43871117 (-) True G58374
TU72982 lncRNA upstream 434560 43873781 ~ 43875739 (-) True G58377
AMCG00009648 mRNA downstream 2857 43423905 ~ 43431555 (-) True AMCG00009648
AMCG00009642 mRNA downstream 61141 43345226 ~ 43373271 (-) True AMCG00009642
AMCG00009644 mRNA downstream 92747 43338664 ~ 43341665 (-) True AMCG00009644
AMCG00009643 mRNA downstream 95890 43332431 ~ 43338522 (-) True AMCG00009643
AMCG00009641 mRNA downstream 102934 43318835 ~ 43331478 (-) True AMCG00009641
AMCG00009651 mRNA upstream 5352 43444573 ~ 43455887 (-) True AMCG00009651
AMCG00009650 mRNA upstream 73224 43512445 ~ 43522137 (-) True AMCG00009650
AMCG00009652 mRNA upstream 166452 43605673 ~ 43644666 (-) True AMCG00009652
AMCG00009657 mRNA upstream 287985 43727206 ~ 43731531 (-) True AMCG00009657
AMCG00009665 mRNA upstream 453229 43892450 ~ 43895658 (-) True AMCG00009665
TU72548 other downstream 760705 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3276941 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 4596848 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4851592 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 6214336 37215960 ~ 37220076 (-) True G56800
TU72928 other upstream 43200 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 550290 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 1069032 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1102673 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1126848 44566069 ~ 44566834 (-) True G58589

Expression Profile