RNA id: AMCG00009650


Basic Information

Item Value
RNA id AMCG00009650
length 1371
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00009650
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43512445 ~ 43522137 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttacaataaaaaaaggctgtGTACCACTTCTTACTTCACACTCGTTCACTTTACTACTAGCCCCAGGAGATCTACTTGGTATTTCTGCGCAGATATGCAACCTGCCCTTCCAGAGCAGATACCCCAGCCTGGGAGGATGTCATATGAGGTCTTCAACGACACAGTCAAGTTTGCCTCGCAAGCAAAAGCTGCTGGAGAAGAGACTGATAAACCTGGAAGTGATGCTGAAAAACCGAGTGATTCTGAATCACTGAAAGCCAAGTTTGACCATCTCTCATCTCAGATGAATGCATCAGAAGGGAGATATAAGGCATTGGAAAATAAGTACACAGAACTGGATGGCAAATTTAATGCAATGGAAGAAGAGATGAGACAACTCAATAAAAGCCACATTGatttgttaaaaacatattcagAGCTTCAAACCATAGCGACCGAGGACTCTAAACCCTGTCCTGAGGGCTGGGAGCTCAGTGGAGGAATGTGCTACTTCTTCTCCACTGATAAAATTAATTGGACACAGAGTCGCAAGGACTGTGTCAAAAAGGGGGGGGAACTGGTCATTATACACACTTGGCAGGAGCAGATGTTCTTAAAAggcaaaattaacaaaatggcaaaagaaaaTTACTGGATTGGACTGACTGATGCGCCTGTTGAAGGAGAATGGATGTGGGTGGACAATACAACTCTCCGCAATCACATGAACTTCTGGGCTGAGAAGAAGATAGGTTCAGGTGAGCCTGATGACTGGACTGAAGAAGATCCTTTAGGGGAGGACTGTGCATGTATGAACTCATTAACAGAACCATTACATAACTGGTTTGATGAATCTTGCACCAAAGCTTTCAGACgaatctgtgaaaaaaaaacactggaaaaacccaaataacaagaaataatacatttttatttttgtaatagaaGTCTAGTCTAGTCTTAAACTGTCTTAAGCACACAGTCACTCCAGTCATACATAGTATTTTAGAAATCCAGTGTTTTGAGGCACAGACTCGATGTGTTGCCACAtttagatttttagtttttagtttatttagacCGCCATGTGAAGAGACTCAGAGCGACAGGAAGGCAGGGCACTGAGGACGATCAATCAGCCCCAGATTACTGCTCCTCTTGGCCAACTGTTCAGCTCTTTATACAGCCTTCAGTGAAGCTGCCAACTACTGTGCTGTCTTTACTATCCAGACTATCCCTCTGTaaatgtactatactgtacacCACAAACCACACTGTGAGCTCATATGATTCAGAATGCTTATGAAATACAACTTCTGTTAATGTCTCACTGAAAGATTATCATTTGGTCGACTGTATAAAATGTTgccattaaatatttgttttgcttga

Function

GO: NA

KEGG:

id description
K10059 CLEC4E, MINCLE; C-type lectin domain family 4 member E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72857 lncRNA downstream 36357 43475833 ~ 43476088 (-) True G58277
TU72810 lncRNA downstream 124527 43387183 ~ 43387918 (-) True G58246
TU72703 lncRNA downstream 502332 43006601 ~ 43010113 (-) True G58149
TU72704 lncRNA downstream 502380 43006601 ~ 43010065 (-) False G58149
TU72563 lncRNA downstream 815312 42696897 ~ 42697133 (-) True G58039
TU72932 lncRNA upstream 9298 43531435 ~ 43547585 (-) True G58336
TU72933 lncRNA upstream 9298 43531435 ~ 43568662 (-) False G58336
TU72977 lncRNA upstream 348217 43870354 ~ 43871117 (-) True G58374
TU72982 lncRNA upstream 351644 43873781 ~ 43875739 (-) True G58377
TU72997 lncRNA upstream 416784 43938921 ~ 43947522 (-) True G58391
AMCG00009651 mRNA downstream 56558 43444573 ~ 43455887 (-) True AMCG00009651
AMCG00009649 mRNA downstream 73224 43434412 ~ 43439221 (-) True AMCG00009649
AMCG00009648 mRNA downstream 80890 43423905 ~ 43431555 (-) True AMCG00009648
AMCG00009642 mRNA downstream 139174 43345226 ~ 43373271 (-) True AMCG00009642
AMCG00009644 mRNA downstream 170780 43338664 ~ 43341665 (-) True AMCG00009644
AMCG00009652 mRNA upstream 83536 43605673 ~ 43644666 (-) True AMCG00009652
AMCG00009657 mRNA upstream 205069 43727206 ~ 43731531 (-) True AMCG00009657
AMCG00009665 mRNA upstream 370313 43892450 ~ 43895658 (-) True AMCG00009665
AMCG00009663 mRNA upstream 380158 43902295 ~ 43918770 (-) True AMCG00009663
AMCG00009666 mRNA upstream 402284 43924421 ~ 43930718 (-) True AMCG00009666
TU72548 other downstream 838738 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3354974 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 4674881 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 4929625 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 6292369 37215960 ~ 37220076 (-) True G56800
TU73015 other upstream 467374 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 986116 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 1019757 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 1043932 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 1260781 44782918 ~ 44785134 (-) True G58653

Expression Profile