RNA id: AMCG00009655


Basic Information

Item Value
RNA id AMCG00009655
length 2592
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00009655
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43751483 ~ 43756359 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGGGAGATACAATTGTGCAAGATAGAGAGAAgtgagggggaagagagaaaggagagcaTGTTGGGGAAGAGGAATTTTGGGATCAGCTACTTATCCCGGGATAAGCAAGGGGTGGAGGTGTACCTCTCTCTCATGTCAGACTGGGACCTGGACGCTGCCTTCGTGAGCGCTGCCAAACCCTACCTGCAGCTGAAGATCGACATCAAGCCAGCGGAAGACAGCCCCCTGCTGGAGGACTGGGATATCATCAGCCCCAAAGATGTCATCAGCTCTGATCTACTTCCGGGTGAGAGGAGGTCCCTGGCGGCTGCTGCCCTGCCCTTCACGCAGTCACTGATCTCCCAGgtgggGAAGACTCTCTCCCGGGTGCAGCAGGCCCTGAGCTGGTCCTACGGGGAGGACGTGAAGCCCTTCAAGCCGCCACTGAGCGACTCTGAGTTCCACAGCTACCTCAGCCACCTGGGCCAGCTGACCCGGCCGGAGGAGCTGAGACTGCGCATCTACCACGGTGGCGTGGAGCCCTCACTGCGCAAGGTGGTGTGGCGGTACCTGCTCAATGTCTATCCAGACGGCCTGACGGGCCAAGAACGCATGGACTACATGAAGAGGAAGACCCGGGAGTACGACCGGCTGAAGGGAGAGTGGAGCTCTAGGACCAGCCCGGAGGACCTGGAGTTCATCAGGGGCAACGTGCTGAAGGACGTGCTGAGGACAGACCGGGCCCACCCTTACTACGCTGGCTCAGAGGACAGCCCCCATCTCACCGCCCTCACTGACCTGCTCACCACCTATGCCATCACCCACCCGCAGgTGTCCTACTGCCAGGGCATGAGTGACATTGCCTCGCCCATCTTGGCGGTGATGGACAACGAGGCCCATGCCTTCATCTGCTTCTGCGGCATCATGAAGCGCCTGGAGGGTAACTTCCGTCCTGACGGCCGCCTCATGTCCGTCAAGTTCCAGCACCTCAAGCTGCTCCTGCGCTACTCCGACCCCGAGTTCTACGCCTACCTGGTATCGCGGGGCGCGGACGACCTCTTCTTCTGTTACCGCTGGCTGCTGCTGGAGCTCAAGCGGGAGTTCGCATTTGAGGACGCCCTGAGGATGTTGGAGGTCACCtggagctccctgccccccgaTCCTCCGGAGACCGAGGTGGAGCTGCTGGGCCCGCCACTGGAGGAGGATGAGGCGGCCTCGGAACTGGAAAGGAGGCGCAAGGAGAGGCAGAGGCGGAGGTATATGCTGCGACCCTCCCGGGAGGAGCTGGTGGAGCCTTCAGGGGGGCGGCAGGAAGGGGATGGAGGGAGGCAGGTGGCGATGGGAGAGGCGGGGCCcaggggagaaggagaaggggaaggagaaggGGAAAGGGAGACTGAAAGGGCAGGGGTGATGTCTGTGTCGGGGCCTCTTCAAGATGGGGACGCGGCACAGGCCCGAGGGAAGGGCAGCTCAGTCCCTCACTTGGGCAAGCAGTCCAGCTTTGGTGAGTTCAAGTACTACAGCGCCCGTCACGGAGACAGTTTCGACATGGATGAAGAGCGTTGCCCTAACCTTTCCCCTCTGCGCGCTCTCCCGACCACCCGCCCCCCAGTCCCCTCCCGGCAGcccacagaggacagtgaggAGGACCCCGGGGAGAGGGAGCCTCTGATCAAGTCCGATGATAAGCCCTCGACTCCAGCCAGCACCGGGAGGAGATCACCCAATGGGCAAACAGCTTCTCCGGCCTCCCCTTTCCTTCCCTGCTTGACTAATTGGAGGAACACCGCTTCCCCTTCCCCCTGCCCCTCCCCATCACTAGCAAATGGGAGAGCAGCCTCCCCGTCCACGCCCACAGGCAAGGCAGCCCTTTCCTCCCCTTCCCTCACCAATGGGAGAGCTTCTCCGGCTCCGGCTACACCCACAGGGAGGCCCAGCCCTTCTTCTTCTCTGACCAACGGGAGAGTTAACTCCCCGGCCACGCCCACCGCAACCCCCAGCAAGCCTGCTATCTCCTCCCCTTCCCTCGGCAACAGCAGAGTGGCATCTCCAGCTACCACAAGATCGCTGGTATCTTCCCCTGTGTTGTCCAATGGGCGGGCAGGCTCCCCGTCCACCCCCACAGGAAAATCCCTGCTCTCCTCCCCTTGCACCGGGACCAGATCCCCCAGAGCAGCCACCCCCAGCACACCGGGGCCGGACAAAGAGGACAAGCCAGCCCCCACACCCTCGCTGCCCCCTCCCCAGGAGTTCGGCAAAGGCAACCCTTTCATGCTCTTCCTATGCCTGTCCATCCTCCTGGAGCACCGTGACCACATCGTCAAGAACAACCTGGATTACAACGAGCTGGCCATGCACTTCGACCGACTTGTCCGGAAGCACAACTTGAACCGGGTGTTGCAGCGAGCCAAGGCCCTCTTCGCGGACTACCTCCAGAGCGAGGTTTGGGACTCGGAGGAGGGAGATGAGGCCAGCTCCGACTCCCCGGCCGCCCACACCCCCCAGCCCCAACCACCGCCGCCTCCTCCTAACTCCACCTACAATCTGGCTGCTATTgcctctccctcctccacctcttcctcctcctcttctgcctCCTGA

Function

GO: NA

KEGG:

id description
K24799 TBC1D25; TBC1 domain family member 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72871 lncRNA upstream 70530 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 307166 43439399 ~ 43444317 (+) False AMCG00009647
TU72773 lncRNA upstream 426904 43318916 ~ 43324579 (+) True G58214
TU72776 lncRNA upstream 440421 43309860 ~ 43311062 (+) True G58215
TU72753 lncRNA upstream 501842 43249403 ~ 43249641 (+) True G58195
TU72891 lncRNA downstream 117422 43873781 ~ 43875723 (+) True G58304
TU72908 lncRNA downstream 153229 43909588 ~ 43915760 (+) True G58317
TU72912 lncRNA downstream 165115 43921474 ~ 43926631 (+) True G58319
TU73083 lncRNA downstream 413126 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 568792 44325151 ~ 44325573 (+) True G58510
AMCG00009653 mRNA upstream 3355 43743454 ~ 43748128 (+) True AMCG00009653
AMCG00009654 mRNA upstream 10620 43736597 ~ 43740863 (+) True AMCG00009654
AMCG00009656 mRNA upstream 31333 43671769 ~ 43720150 (+) True AMCG00009656
AMCG00009647 mRNA upstream 307063 43436990 ~ 43444420 (+) True AMCG00009647
AMCG00009646 mRNA upstream 326633 43416831 ~ 43424850 (+) True AMCG00009646
AMCG00009658 mRNA downstream 78524 43834883 ~ 43852529 (+) True AMCG00009658
AMCG00009659 mRNA downstream 102722 43859081 ~ 43873704 (+) True AMCG00009659
AMCG00009662 mRNA downstream 123670 43880029 ~ 43890471 (+) True AMCG00009662
AMCG00009660 mRNA downstream 141507 43897866 ~ 43902765 (+) True AMCG00009660
AMCG00009661 mRNA downstream 183934 43940293 ~ 43951629 (+) True AMCG00009661
TU72303 other upstream 1673242 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2756824 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3646535 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3802283 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 4314488 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 176593 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 630138 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 811006 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 828203 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 876391 44632750 ~ 44651967 (+) True G58600

Expression Profile