RNA id: AMCG00009656



Basic Information


Item Value
RNA id AMCG00009656
length 672
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00009656
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43671769 ~ 43720150 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGAAGCAGTACATCGCTGGACTCCCAGCCATCAGAGCAGAGGACAATGGGGTAACATTGTTTGTGATGGCAGAAATAGGTAAACACGGGAAGCTACATGGGTATAAAATGATGCAccttaaatgcattcaacagGGCTTTGTGGAAACTCAAGCCACCAGATGCCTTCTTCACACACTGCATCCTGAAGGGGTCATGTCAACAGCGTCTTACCTGGGTTGCTGGAGCGGAGAGAGTCTGCTGCCTGCCCCTTTGCTGCGAATGCACCTGCAtccagagacacagagagaagatGTGAACCGAGAGGTGACCTGGCGAGTTCTGCAGGTGGCCATGCCAGTCACTAAAGAGCACCATCGCTGGTGTCAGTTCCCTGGGTTTCTCCAGCTTGATGAAGACTGTAATCTGAGGGCTGCGAGCCAGCAGTCTCTGGATGGCCCTGTGGATACTGAGAAGCCTGTTGATGAAGATCTCCAGAGGGAAAGCCCTCAGGTGCTGCCCTACCCCAATGACCACAGCCACATTCTGCCCCCCCCCTATCCTGTCCAGCTCGTGGGAGATCAGCAACCTGGGGGCTTGAAATTCAACCTGGCCAATCAATGTTCAACAGTCCTCACCATAACAGCAGCAGCTCTTAATGAGAGCAGCAAGGTTCGGGAACAGGCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72836 lncRNA upstream 227452 43439399 ~ 43444317 (+) False AMCG00009647
TU72773 lncRNA upstream 347190 43318916 ~ 43324579 (+) True G58214
TU72776 lncRNA upstream 360707 43309860 ~ 43311062 (+) True G58215
TU72753 lncRNA upstream 422128 43249403 ~ 43249641 (+) True G58195
TU72734 lncRNA upstream 458741 43212710 ~ 43213028 (+) True G58178
TU72891 lncRNA downstream 153631 43873781 ~ 43875723 (+) True G58304
TU72908 lncRNA downstream 189438 43909588 ~ 43915760 (+) True G58317
TU72912 lncRNA downstream 201324 43921474 ~ 43926631 (+) True G58319
TU73083 lncRNA downstream 449335 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 605001 44325151 ~ 44325573 (+) True G58510
AMCG00009647 mRNA upstream 227349 43436990 ~ 43444420 (+) True AMCG00009647
AMCG00009646 mRNA upstream 246919 43416831 ~ 43424850 (+) True AMCG00009646
AMCG00009640 mRNA upstream 353268 43315628 ~ 43318501 (+) True AMCG00009640
AMCG00009635 mRNA upstream 398397 43267927 ~ 43273372 (+) True AMCG00009635
AMCG00009634 mRNA upstream 404870 43258520 ~ 43266899 (+) True AMCG00009634
AMCG00009654 mRNA downstream 16447 43736597 ~ 43740863 (+) True AMCG00009654
AMCG00009653 mRNA downstream 23304 43743454 ~ 43748128 (+) True AMCG00009653
AMCG00009655 mRNA downstream 31333 43751483 ~ 43756359 (+) True AMCG00009655
AMCG00009658 mRNA downstream 114733 43834883 ~ 43852529 (+) True AMCG00009658
AMCG00009659 mRNA downstream 138931 43859081 ~ 43873704 (+) True AMCG00009659
TU72303 other upstream 1593528 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2677110 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3566821 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3722569 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 4234774 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 212802 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 666347 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 847215 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 864412 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 912600 44632750 ~ 44651967 (+) True G58600

Expression Profile