RNA id: AMCG00009658


Basic Information

Item Value
RNA id AMCG00009658
length 2310
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00009658
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43834883 ~ 43852529 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGCACAGATCCATTACTCCACGCTGGCTGCTGCCCAGTCCTGTCATTGCCTTATCAGTATCCGCATCCTGCGGCGGCTGGGTCACTCTCTAACTGGGCCTGGTGGTAAATGCGCCATGCCATTTGGGTGCCTGGCCATCCGAGATGGGCGAAACTACAACAGCCTATCAGAGATCACCGACAAGTATGAGATTGGCCAGATCCTGAGGGCGAAGGAGTTCTGCGAGCTGTGCCTGGCCAAGGAACGTCAGACGGACAAGGTGTTCATCTGCAAGAAGTTCCTCAAGAAAGATGGCAGGAAAAGGCACGCTGGAGGGGCACAAGGGAGGGTCAACCACCCCAATATCCTGCAGCTCATTGACACCTTTGAGACCCGGAAAGAGTACTACATCATCCAGGAGCTAGCGACCGGAGGGGACGTGTTCGACTGGATTCTGGACCAGGGCAACTACACAGAGCGAGACGCTGCCAATGTCATTAGACAAGTCCTGGAGGCCGTGGCCTACCTGCATTCCCTCAACATCGTGCACAGAAACCTCAAGTTGGAGAACTTGATGTATTACAACCAGAACAACCACAACAAAGTGGTGTTGCGAGATTTCTACCTGTCGCGTTTCGAGAACGGGTCGATCACTGAGCCCTGCGGAACTCCCGAATACCTAGctccagAAGTGGTAGCCCGCCATCGATACGGCCGCCCAGTGGACTGCTGGGCAGTGGGGGTCATCACCTACATCCTgcTGTCAGGGAATCCCCCCTTTTACGATGAGACGGAGGAGGAGAACACAGACCTCCACAACCGCATCATCTTCTGCCGGATCGTCTCAGGGGAGTTCGAGTTCGACTCCCCGTACTGGGACGACATCTCTCCTGCAGCCAAAGAGCTGGTGTGCCGGCTGATGGAAGTGGATCCCATGCTGAGAATCACGGCCCAAGATGCCCTCTGGCACGAGTGGATCGCAGGCAATGGGGCGTCCGAGAAGAACCTGAAAGATGGCGTGTGCGCCCAGTTCGAGAAGAACTTTGCCAAGGCAAAATGGAGGAAAGCCATCCGCGTCACCACCTTCATGCAACGCCTCCGAGCCCCCGAAGCCGGCGGGGTGGGGGTGGGCGGGGGTGAGGGAGGTGGCCGCTTGCCCGTCACCCCCCGGACATCCATGAGTGTCTCCCATGAGGTCACTGTTGAAAACAGGCCCGAGGAAGAGGACGCACAACGGGAGGGCGGGAAAAAAGAGCGAGGAACAGCCACTATTCCCAGCAGCCTGTCTGTGGGCATCTCCCCTACATCCACCCCAGACCCCCAGCTGGAGCAGACCGGGCTCCCTTCAGGGAAACTGGGAGAGGATCTGGAGAAAGGAGGTGGTGGAAAGAGCCCCTGGAAAATGGCAGCCAATCTGGGGCCGGAGAAGCCCAGACTTCAGCCCGAGAAGCCCTCCCTGTCTCCTGTGACGGAGACCAAGAAGATCCCCGACCGAGGGACTAAGGTGATCATTCTGGAGCAGACTGCCAGCCCCGGAGACAAGAAAGTGGGGGCCTCCACAGAGACGCCCAGCAGGCGCAAGATGGCGGCCGTGCTGTCTCACTCTGTGGATAAAACAGGAGATCCGGAAAAGAAGACGGCGGGAGAGGCCACGAACAGGGGGGCGGCAGACGACAAGAGAGCCAAAGCGGAGAAAAGCTGGTGCCAAACCCAGGTGCCGGAAACTGTGGCTGAGAAGAGAGTGCCGGTGTGTGCGGAGGGAAGGAGAGGCGGAGGAGGGTCCGCGGAGGCGAGCCCGGGTTGGAAAACGAGCCAGGCGGCGGGGGGCAGGAGTCCTGAACCGGGAACACCCAGGAAGGGGATGGAGGAGCTCGGCGCGGCGAGGGGTTCGCCGGGCACGGGGCGGAAGAAGACAGTGACCATTCAGGAACAGAGCGAAGCTTCCTGTCTTTTTGGGGCATCCgcttcctcctcctgctcccctGCCACCAGCACCTTGGGCCGTGGCGACTGGCAGATGGACAGCGTGATCGAGCAGATCGAGAAGCAGATGGCTGCTGTGCTGGAGAAGATCGAAGGTGACATGCCGTCCCTACTGGAGCAGATCAGCGACAGGCCCGACTGCCTGcgctcccacccctccccaGCCCGGGGGACCCAGACCACCCCCCGGCCCACCCTCCCCCACCTCACCATCCAGCCGCCCAGTGCCCCGCCGCCCACCCCGCCTGGCCCGGGACAGGAAGACGAcggggagagggaggagcagGAAGGTGGGGTCCGGTCCAGCCAATCACCACGAGGGGGCGTGTCGGGAAGAGGCCTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72871 lncRNA upstream 153930 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 390566 43439399 ~ 43444317 (+) False AMCG00009647
TU72773 lncRNA upstream 510304 43318916 ~ 43324579 (+) True G58214
TU72776 lncRNA upstream 523821 43309860 ~ 43311062 (+) True G58215
TU72753 lncRNA upstream 585242 43249403 ~ 43249641 (+) True G58195
TU72891 lncRNA downstream 21252 43873781 ~ 43875723 (+) True G58304
TU72908 lncRNA downstream 57059 43909588 ~ 43915760 (+) True G58317
TU72912 lncRNA downstream 68945 43921474 ~ 43926631 (+) True G58319
TU73083 lncRNA downstream 316956 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 472622 44325151 ~ 44325573 (+) True G58510
AMCG00009655 mRNA upstream 78524 43751483 ~ 43756359 (+) True AMCG00009655
AMCG00009653 mRNA upstream 86755 43743454 ~ 43748128 (+) True AMCG00009653
AMCG00009654 mRNA upstream 94020 43736597 ~ 43740863 (+) True AMCG00009654
AMCG00009656 mRNA upstream 114733 43671769 ~ 43720150 (+) True AMCG00009656
AMCG00009647 mRNA upstream 390463 43436990 ~ 43444420 (+) True AMCG00009647
AMCG00009659 mRNA downstream 6552 43859081 ~ 43873704 (+) True AMCG00009659
AMCG00009662 mRNA downstream 27500 43880029 ~ 43890471 (+) True AMCG00009662
AMCG00009660 mRNA downstream 45337 43897866 ~ 43902765 (+) True AMCG00009660
AMCG00009661 mRNA downstream 87764 43940293 ~ 43951629 (+) True AMCG00009661
AMCG00009670 mRNA downstream 126063 43978592 ~ 43992050 (+) True AMCG00009670
TU72303 other upstream 1756642 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2840224 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3729935 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3885683 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 4397888 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 80423 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 533968 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 714836 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 732033 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 780221 44632750 ~ 44651967 (+) True G58600

Expression Profile