RNA id: AMCG00009661


Basic Information

Item Value
RNA id AMCG00009661
length 1810
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00009661
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43940293 ~ 43951629 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGTGCAGCCGGGAGCAGGACTGCACTGTGCTTGTGGCTCTGATGCAGCTGTGGGTGGTGATGGCAGAATCTTTCACAGTGTCAGTTCCCGTCGCTCCCCTGGTGGCTCGGCTGGGAGATGACCTCACGGTGCCCTGTCACATCTCCCCTGAGGACAGCGCTGTGGCCATGGAGGTGCGCTGGAGCCGAGAGGGGCACACACATCCTGTGCTTCTGTACAGACATCAACAGGAAATTCAGGGCCAGGATTTTGTAGGCCGGCTGGCACTGAGCAGAGCAGGACTGGAGAAGGGCAACGTGTCTCTGGTGATCCGGGAGTTTAGATTGAGGGATGAAGGGCGGTACATCTGCTTTGTGGATTCCGGCTTGCAGTATCACAGAGCAGCGGTGGAAGTGAAAGTCTCCAAATCTTTCACAGTGTCAGTTCCCGTCGCTCCCCTGGTGGCTCGGCTGGGAGATGACCTCACGGTGCCCTGTCACATCTCCCCTGAGGTCAGCGCTGTGGCCATGGAGGTGCGCTGGAGCCGAGATGGGCACACACATCCTGTGCTTCTGTACAGACATCAGCAGGAAACTCAGGGCCAGGATTTTGTAGGCCGGCTGGCACTGAGCAGAGCAGGACTGGAGAAGGGCAACGTGTCTCTGGTGATCCGGGAGTTTCGATTGAGGGATGAAGGACGTGACTGGCAGTGCCCCCCTGGTCTCTCTGGATGGGCACCAGAATTGAGGCATCGCCTTGTCCTGCAACTCTCAGGGCTGGTACCCCCAACCAGAGGTCCAGTGGATAGACCAAGCAGGCAGCCCTTTCACAGTCTCCAGCAGATCCCAGTTCACTCAAACCCCAAACGGGCTGTACTCTGTCAGAAGTCAAATTCTGCTGTCTGGGCAAGAGCAGGGAGCAGTGTCCTGTGTTGTGAGACACGGGCGAGACGGGACACAGGTCCAGTCCAGAGTCTACATCAGCGACAGAAGAAAGCTACGTAAATTATATAACACGGACAGAAGTGATATTTACAAAGATATTACAATGGATCCAGAAACCAGCCACCCAAAACTGAAAGTCTCTGAAGATGGTAAATCTGTACGGTTCGACAAGCAGCTCCAAGGTGTCCCAGACAACCCAAAGAGATACAAATACTGGCCGGGTGTTCTGGGATGTGAGGCATTCTCCAGTGGGAAGCATTACTGGGAGGTGAAGGTTGATGGTTTGGACCACTGGGATCTCGGGGTGGCCAAGGAGTCGGTGTCCAGAGAGCAGGTCGGTGACATTCAGCCCAGTGACGGCTACTGGAGCATCTGGTTTGTCTACAATGAGTACCGAGCTCTGGACAAGAAGAGGACaataataaaacccaaacagACAGTTCAGACAGTGGGCATCTATTTAGATTATGATAGAGGAAGACTTTCTTTCTATGATGTAGAAGAGCAGCTTCACCTGTACACTTTCCACAGCAAGTTCACTGAGAAACTGTATCCTGTCTTCAACCCGTGGGAAAGCACCAACCCACTGGTTTTGATATAACATGACCAGAAGCCCTTAGCACTACCAGCTTTGTGTGTGCAATGAAGGTGTGATGTACTGTACTCAAGGAGATTGTAAAAAGGTTTATGCAATGTCTCACATGCTGTTAATATCTAACACCTCATTGCTGGGGGGTTTTCGCCACATTtggttttattacaaaaaataaatgtctagtATTGCTGTCTCAGCCTTTAAATTGGAATAAGTCCAGACCCACTTAATTGTTGGAATTTATCTCTCAATaaggaaagggaaataaaagaGAATGGGGAAATTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72912 lncRNA upstream 13662 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 24533 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 64570 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 259340 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 495976 43439399 ~ 43444317 (+) False AMCG00009647
TU73083 lncRNA downstream 217856 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 373522 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 376642 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 434868 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 434868 44386497 ~ 44407568 (+) False G58522
AMCG00009660 mRNA upstream 37528 43897866 ~ 43902765 (+) True AMCG00009660
AMCG00009662 mRNA upstream 49822 43880029 ~ 43890471 (+) True AMCG00009662
AMCG00009659 mRNA upstream 66589 43859081 ~ 43873704 (+) True AMCG00009659
AMCG00009658 mRNA upstream 87764 43834883 ~ 43852529 (+) True AMCG00009658
AMCG00009655 mRNA upstream 183934 43751483 ~ 43756359 (+) True AMCG00009655
AMCG00009670 mRNA downstream 26963 43978592 ~ 43992050 (+) True AMCG00009670
AMCG00009668 mRNA downstream 55285 44006914 ~ 44013300 (+) True AMCG00009668
AMCG00009667 mRNA downstream 62097 44013726 ~ 44022254 (+) True AMCG00009667
AMCG00009669 mRNA downstream 73915 44025544 ~ 44051535 (+) True AMCG00009669
AMCG00009676 mRNA downstream 139911 44091540 ~ 44099575 (+) True AMCG00009676
TU72919 other upstream 4531 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 1862052 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 2945634 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3835345 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 3991093 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 434868 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 615736 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 632933 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 681121 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 1104436 45056065 ~ 45057874 (+) True G58747

Expression Profile