RNA id: TU73015


Basic Information

Item Value
RNA id TU73015
length 973
RNA type TUCP
GC content 0.55
exon number 8
gene id AMCG00009672
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43989511 ~ 43995654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttgctacAAATGCAGGTAAGTGATTTCATCTGAAGTGTTGGGACGAGTTTTCGGTGGATGTTTTGCCTCGAGAGTCTTGTTTTTTTGCGGAGCTCGATGCATTAATTTCAGGCAGAATTTAGAGGGGGACCATCACACTGGCAAATTAAAGGAGTGATACTGTAATCCCGGTGTGGGGACCATGCTGAGATTGAGCGTTGCTGGGATTGTGACTCTGCTGCAGGTGTGCAGGGTGACAACAGAGTCCTTCGCTGTCTCAGTTCCCACCGCACCCCTGGTGACTCGGCTGGGCGATGACCTCACAGTGCCCTGTCACCTCTCGCCCGCTGTCAGCGCTGTGGCCATGGAGGTGCGCTGGGCccgagagagcgggagagaccCTGTGCACGTGTACAGGCAACACCAGCACACACAGGGCAGGAACTTCTCAGGCAGGACTACCCTGAGCAGAGCAGGGCTGGAGAAGGGGGATGTGTCTCTGCTGATTAGGGACCTTCGAGTGGCAGATCAAGGGCGCTACACCTGTTTTGTGGATTCAGGCTCCTTCTATGACAGAGCAGAGGTGGAGGTGAAAATCTCCATGACTGGCAGTGCCCCCCTGGTCTCTCTGGATGGGCACCAGAGTGGAGGCATCGCTCTGTCCTGCGAGTCCGAGGGCTGGTACCCCCAACCAGATGTCCAGTGGAAAACCAAACCCAGAACCACTTTGTCAGCTGCCCCCAGGTCCCACATCACCCGAACCCCAGACGGGCTGTACTCTGTCAGGAGTGACCTTCTGCTGCCGGGGCGGGCAGGAGGAGCAGTGTCCTGTGTTGTGACACACGGGGGAGACAGGACACAGGTCCAGTCCAGGGTCTACATCAGTGacAATTTGAAGACAAAGGATGATATTTTGAAGTTAAATAATGTGCTAGGTGCACAGAAAGAGATAGAGGAAGCTCGGAAGTATAAAGAAACAATAACATTGGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73002 lncRNA downstream 12025 43977285 ~ 43977486 (-) True G58395
TU73001 lncRNA downstream 16881 43972264 ~ 43972630 (-) True G58394
TU72997 lncRNA downstream 41989 43938921 ~ 43947522 (-) True G58391
TU72982 lncRNA downstream 113772 43873781 ~ 43875739 (-) True G58377
TU72977 lncRNA downstream 118394 43870354 ~ 43871117 (-) True G58374
TU73065 lncRNA upstream 101622 44097276 ~ 44104710 (-) True G58452
TU73069 lncRNA upstream 113682 44109336 ~ 44109715 (-) True G58456
TU73070 lncRNA upstream 114315 44109969 ~ 44110283 (-) True G58457
TU73073 lncRNA upstream 119996 44115650 ~ 44121067 (-) True G58459
TU73143 lncRNA upstream 329503 44325157 ~ 44325573 (-) True G58511
AMCG00009664 mRNA downstream 53753 43933227 ~ 43935758 (-) True AMCG00009664
AMCG00009666 mRNA downstream 58793 43924421 ~ 43930718 (-) True AMCG00009666
AMCG00009663 mRNA downstream 70741 43902295 ~ 43918770 (-) True AMCG00009663
AMCG00009665 mRNA downstream 93853 43892450 ~ 43895658 (-) True AMCG00009665
AMCG00009657 mRNA downstream 257980 43727206 ~ 43731531 (-) True AMCG00009657
AMCG00009671 mRNA upstream 1058 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009677 mRNA upstream 55756 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009678 mRNA upstream 78196 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009683 mRNA upstream 260761 44256415 ~ 44264122 (-) True AMCG00009683
AMCG00009690 mRNA upstream 289224 44284878 ~ 44293118 (-) True AMCG00009690
TU72928 other downstream 44214 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1315804 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3832040 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5151947 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 5406691 38580285 ~ 38582820 (-) True G57155
TU73231 other upstream 512599 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 546240 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 570415 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 787264 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 1325189 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile