RNA id: AMCG00009673


Basic Information

Item Value
RNA id AMCG00009673
length 8556
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00009673
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44128283 ~ 44142154 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGTGATCGTTcccaaaaccaaaccaaaccgaACCAAGCAAAAAAGCAATGCCAAAATGGAGGGTAGAGATGCCAAGTTGCAAGTTGCTATGAAGGTGCCTTTGCTTCCAGACACGCACCACTTCTCACGCATCCTGTTCAAACCTGGCCCCTTGAGGGAGCTGTGCAGTATAACAGAGAGGATCTGTTAtctcccccacacacaaattCCCAGGCCTGGTCTTTACCAAGGAGGAGCTGGCCAAAGCAGAGGGAGTCAAATCAAGACCATGGCTCCCCTCAAGCAAGAGGCCATCTAAGAATTTCTCCACGCCAAAGTGGCTGAGTACATGATAGAGCTGTAGCACAGAGTACCGCAAAGTGGTCCAGAATAAGATGGGCAACACCCGATGGGATCTAAAGAAATCCTTTCCCTTGTCCCTCAAGTGTGGCATTGTGAATGCTCCAGCCCCTTGGGATACATCCACACGACTTTGGCCAACAAATCGGATTCCCAGAGTACAGAAGAAGCCCTGGGAACGTTTCTGATGCTCTGTTCTGCCTTCTTGGACTGGATTCAGGACAAATTTGTGAATGAGGTCCAGAGAGTGAGGAAGCCCTTCTTTCATCCCATGGTTGATTTAGCTTTGAAGGATTCCATGAAGGTTTAGAGTTTTTTCAAGAAACTCCTCGTTGAAATTCTAGTATCAGATTTAAAGCTGGTTATCAACCAATGCTGCTCAGTGAGACCTCTTGTCATTGTCAACTTTTTATGATCGCCAATTTGACTTTGATCCACTGCTGAGTGGCAGTCTACCATCTCTAGGAGGGTGGGGAATTGGCCATAATTGATAAGTATATGGGAGCCAATTGATCCCAGGACCCCGGTGTTATCATAACTAACAGGGCTACCCAGACTGTTATCTTCATTTCCAAGGGCTGTGGCCTCACTCTGTGGAACTGAGTTGCAAGAAGGGAATAGGAGATCTTGATCTACAGGGAAGtaagaacaaagaaagaaaacctggCGGTCATTGTGGATGTCATGAATTGAAATGAGAGCTTCAGAGCTCACTTTGTTTCCATTGCACATCCCAAGGTACACTCTGATCCTCTTTCCAGGCggctataaataataatatttaaaaaaagaaaagaaactgagTGAATAATTTTAAAGCACAGGCATTTGAAAAGGCCCTTCTTACCCATTTGTGTTCCAGCATCAGGTTTGTGTAGGAACAAAACATACAAGAGACTGTCAACCCCCAGAGAGTACTGAACCCCCTGCCCGTACTGAACGCACTGAAGTTAAGAAGTCTCATTGTGTTTTGATGAGGCTATTCAGGCAGCTGGTGAAAACAATATCAATCCCCGTAGTTAGATATGTGTCACCATGTGTGAATCTCATTTAGTTCCTCCTGCACCGAAGGCTTTTTTCATCCATACCTGGGATTCCTTAGCAGGGCAGAGTTCCCGTGGATGTTTGTCCAGGTGCTGGAGTTTGTTTCGGGTTTCCAAGTGGAATAAATCGAAACGCTACAATGGTTTTGTGCGTCTAGAGTAGTGTTCTTTGAATCCAGAGCCTCAAGGGCCTTGACAGTCTGGGGCTTTcattccaactgaggtcttcaTTGGTTAATTGAAGATGATTATTCACTTAACTgaagcaatttaatttattaggCCATACGCAAAGGATGGTTTAAGGATACCTGTATATTGTGAAGGATTTTGAATCTCTAGACCTGGATTTCAAGAATGCTGCTCTAGATCCCTGGTTCCTAGAGCTTGGGTCTAGATGGCCACTGGTTCTGCTGGTTTTCACTCCAACCCCATTGTCTCCCACTAGAATACCTATGACTAAACTCAAGTCTTCTGTAACCattctctccccccccctcctcttctctcGTCCATGGGGTCTAAACCAGCTGTCGTACCGGGACCAGAGAATACGCTCCCGACCCAAACCCAAACCCAGACGCCCATGGGCACCCCACCGTGGAGGCCCCAGGACCTCGAGTCGTTGACCCTGTCGGCCAGGGAGGGGGATCCCATGTCGGAGGGTGGCTTGCCCATCCTCCAGGGCCAAGATGAGGGTCTGAGACGAGGTGGCCCATTCGTGTGTCTCCTGTGTGGCCGATCATTCCGGGCCGCTCAGAACCTCAGAACCCACGAGCGTACACACACCGGCGAGAGGCCTTACCCCTGTGCTGTCTGCGGAAAGCGCTTCACCCAGAAGCAGAACCTGACCCGACACGAGAGCATCCACACTGGCCAGGCACCCCATCGCTGCCCCCAGTGTGGGAAAACCTTTTCCCAGTTGGGAAACCTCAAAACCCACTACCTGGTCCACACTGGGGAGAGGCCTCATCGCTGTGTCCTGTGTGGCCGCAGCTTCAACCAGGCCCAGAACCTCAAGAGACACCTGCGAATCCATGGCAAGGTGGACTGATGCCACACCTCCAGGGTACAAAATGAATAGTGGGCTGCCGTGCTCCTGGAGGTCTAATAggtatcatcatcatcgtcattatcatcatcattaatattcttatttctttattagcaCACACTCTTAGCCAGGGTGACAGTTATACACTTATACAACATATACACTTTtcaaaaagcatatatatataatatataaatacaaccTAGAATACCTGTCCTAATTAAAGTGAACTgaaaatcaaatgcatcagtagtAGTTCCTCCAGGACTATGCACAATGGACAGGATTACCATTAGCAGAGAAGCGGTTACGGTGAGGAGGTTTTAGAAGTGCAAGAAGAAGCACAGAACCATAGCAATAAGAAGCAACCTGTAACTTTAGCAGACAGGAGGCTCAGTTAAGTCATGGATGGTCGCTGAGGTAGAGCACTGGAGATCCCTCCAGCACCAGGCTTCCCCACAGCCGATACTCCGGTCTGTGAGCACCGTGAGAAGGCCCGACCGCTATCAAGGTACAGAAACCGAGCGGCAGTGGTCCTGCTCCAAACGGGCACCTGTAATCTGATTGAATTCCTATGAACTTGCAAATGCTCTTGGAAGGCTTTTAGGAATGTGGtcgtgtatttttttttttttttgatgagaACCCTGGGATTGTAAATTGGTCATTACTTTGTCCTTTATCAGGGTGGCCATTCTTGGGAGTGGGATGCctattttgaaaacagaaaacctACTATAGCCAGTGGTGAAGGTCCCAGGGACATTCAAGCAGGCCAGGCAATAGATGTCTTTACTGCCAGCTTATACATGTTCAATTTCTCCTGTATTTGTTGATATTCTTTGCTACTCAGTTGATCACTGGTCTCTGTTCATATGGGTGGACTAGGGAGATACGCACACACTTTTCAAAGGTCTTTTTGGCTCAAGCTTGCAGTTACGAGGAAGGTGCTGGGACCGGAGGACTTGGTGCTAGGTTTGCTGCATGTGTACACTGAGCGGTGTTGGGATACAGAAAGGAACTTGACAATACAAATCTGTCacatgaatataataataaaaaacagtctGTGCTTGTATGAGTGTTTATAATTGTTTGCTTTCACGGATGTGTCTTTGATCTGTCCCAGATTAAAGTATTTCACAGTACGTAGTCACTGGCACACTTTGAGATGGGATGGGATTTTAAAATCATCTTTAAGacgaaatgcatttaaatgaagcaACACCGTAATGAAGGGTGGTTGAAGGTAATAGTGTTCAGTGATGGAGTGATATCTGCCGTCGAGTGTTCAGTGATGGAGTGACCGATCAGTGGCACTGATTTGAGCAGGAGAATAATGGCACTTTAGGATTTAAGAACAAATTTATAAATCTAAGATGTGTCGGGTCTTTAAGGTATTACTTGAGAAGGACACATGAAACAAAGACCCATAACAATACCACAGTGACACAGgcctttgttttgttatggTCATTGCAGCAATTAAGCAACAGTATTCAGTTTAGCAATGTTGTCTTGCACAATTTTAACATCAATGTCTTTTGTGTCAAATGGTAATGAAAAGGGACAGTGAAAGCATGCGATCATCCTTACTGTTGTCTGTATTTCAGTATAGAGGGAATTTCCAGCATCTGTGATCAGTCCAGAATCATAGGAAAACCACAAGACCATTTGCATAAGACTGCTTCAAAAGGTATTGCAGCAACTAGCAAAGACACGTGGTTGCAATTGGTTGCGCTGGTCCTTGTATTTCATCTTGCAGAAGAAACCGGCAACTATTCTCTCCACTTGACcaagaaagaaacaacacagGCTACAGcctctttgctttcttttgcaCTGTTTCTATCCACAAGGAGCTATactgaaacacaattattttccggaacatatatatatatggtgtgtgtgtgtgtctgtgtatatacatattaatacatcagAGACTTTGCTTAAATGAAGCCATTTACACTTGTCTGGATGGTGGCCCTGTGCTCACTTGCTTCCCCAACAGTGGCTTTAAAGCTAGGATCGAACTTCTTAACAGATTCTTTCAGAGAAACTGGCTTGTGTGAAGGACTGGCTTGCGATCTTGCTGATTCTCCGGATGGCACAGTCAGGCTGAGTGGTGGGGCTGAGCGCTGCTCTGGGGGGGTGCAGGTTGTCTTCCTTGGGCAGTGGAGAAGTGTGTGCTCCAGGGGCTGGGACCTGCGCGAAGCTGAAGTGGTCTGCCGCGAGGTGGGCTGCGGGATGCCCATCTCCACCACTTCGCACACGGAATCGGGACGCGTAGACCTAGAAGTCAGCTGCTTGGGGACGGAACGCAATCTGCAGAGCTGTGGACTGAGAGAGACGAGGGATTTCGCCTGCTCTTTCCTAAAAGGAGCCGGTGGAGTCGTTTGTGCAGATGCAACCCTGTCACCAACAACTGTGCTTCCGATGACAACTCCTGACTCCCATTCCAGCTTCTCTTCCATGTCGAACTTCTCCAAAGCTTACACTGCAGTTAAAGTGTTCGGCCTGATCGCAATGATAGTGGCTGTCATTGTGACCGAAATCAAGACCAGACCGAGAGgtggaggagctggagctACAATCCCGAGAGCCAGAGGGTGAGGAGCTGGAGCTGCCGGCCCCGGGGTATCCCATGTCCGGCAGGGAGGAGCTGGAGGCCCAACCCcctgaaatgttttgtatatattcacATCAACATATTACTCTCACCTCTGCACTCAGCTGATTTACACACATGCATTAATTTGGAAAACCATAGGTTCCATTATAAACTCCTTTCATTTCCATCAATCAATTCACTCAAATCATAAAATCTCCCAGTTATAACCCTGTTACAAATATttgagtaaaacaaatattatgtcACAAATATTCAGACATAAAAGTTTGTGTTAGACCTTTTCAGAGGCACGTTGGAGCAGCAGTGATTGTTCAAGAGAggtggcatatatatatacccataTATACCCCGTGTTTGATTAAATCATTGTGGTGTGCCAGCTTAGCTATACATTAAAGTAATCTGCTCATGCAAAGTACTGTCATTTACCCATGATAACCCACTGAAGTTTCTCCAGTTGGCAGGACAGCATCTGAAAGGGTAACCCAGAATATGGGCTTCATAGGTGGTATTTTGTCACAGGGAGGGAAGTGTGAACAGTGTGATTCTGTCTACAGCAATGCTGTGGCAGTGTAGACAGATAGATTTGGCTGGACATTTGGTAAGAGTGAATTCAGTGTATTCTTTACCTGTTCCAAATCACTATTCCTGCAGGTCTCTCcctttgcattttgtgtttgcgATTTCAGACATTGAAACACATACTTGATTCTTtgaaattcaaaacaataaGGCACCTGCTGAAAAACAGGCATTGTAATCTGGGGCTGGACAGGAAATGTTCATATGACACTGAATTGTGTGGATTTGTCTTATTTGAATGAGAAAACTAAACTGGGAGGATGAGCAAaatgtaagaaaagaaaatataagttCTCTTAAGGGCTATATATACAGCTGCAATCAGAAATATTCACACCCTTTCTTTGAATTTGGGAAAtatgtttgttaattaaatattctCTAAACTATACCTATTGATGAATCCAATTGTATATCCTGTATTAGGAGCCGTTCAAGACATGATCAAATGTGatgcaaaaacatttgaagtgaGAATTGTTGAGCATTAGATCCAttgattttcattaataataataaggatatGAGAGAGAAAGGTACATGCACATTACATTATACAAGCAAAAAAGCAAGAAGTCTATTATTCTCCTCTTTTTAGTTAGTTTTTTATGAAAAGAGCTAAATTTACAGTCATATACTTAATTCCTACAGTTACAAAAcacctgcttttaaaaaatccatcaccttaaatgtacaaatgagaTAAGCTATAGTATGGTACAAGTTTGACAGACCGGAAAGAATACAACTGGAACATAATTAATTATGCATCAAAATTTACTTTTTGGAAATGACTAGGGagtttgcatatttaaatggttttgtttgtttatggaAATAACCATACATGTGAAACACCTGTTGTGTGGAGAGCACTGACCAACGGAAGcagaacatatatatttgtagccTGTCAGCTGgaattaatattgaaataaacaaacaaacaaataaatacataaataaaaggtagtaaaatcaaagcatttttaaCACACCTTAACCGGGCCCATGACACCAGTGCATCTCCGAGAAATGCTTTCTGGAGTCTTGAAATTCTAATAGAGATGTGCTGaatgcaaatattgtattatatggTTTTGTCACAGCCACATTAACAAATGGGGAAGCATTGGGAGATAAGAAATATATGTGCATGCAGTGTAAGCaaacactttgttttttcagataacAAAAACCTGCTAGCAGTTTCTAACCTCCTACAgcatcaaaaacattttctgtggttttctaaataaatatacaagcaCATTTTGAACCAGTTTCACTACACACACGCATGAATGATAGATCTCTCTAGCTCTCTGTCAGCACAAGCCCTGAAGAGCTTCAACCCATCCCTTGTTCCTCCAGACTGATTGTCACTCATGGATCCTTTCCTCATCATCTCAACCTCCGTCCTCAACACCACCAACAATACAGCAACGGGCATACATATCTGCGAGGACAGAATAGCTTGTTTCATGTCCTCCATGATAGTGGATTCTATCAGTGCCATCCTGGGTTTTCCAGCCAACCTGAGGACCCTGCAGGTGCTTTGGGGGAGGGTGACCAAGTCCTCCACTTCAGATGTCTTCATCGGTAACCTTGCAGTCCTGGACACTCTGTTATGCCTATTGACTCCCGTGAAAGCTGTTAACTATTTTCACCCAAACAGCCTGTACCTCTGGaaagctgtgatttttttttttttgcactcaATGAGACGGGGGGTCCATTGTTCCTCTTCTGCGTCTGCCTTGACTGCTATGTAGCCGTGCTTCACCCAGTCCATTTCTTGCACTACAAGGATCTTGCGTACAGAGCCAACTGTTCTGCTGTCATTTGGGTCATTACTGTGGTCATCTCCTTCTACATTACCTTCCAGTCAGGTAAAGAGGCTTCATACATTATAATCAGCATCTTCTGCAGCGCCTTCACATTGATGCTCTTCTGTAACCTCTCCATACTGTGGGCTCTTAGGCAGGCTGGACCGGTCGCCCAAGAAATGCACCCCATTAAGAAAAAAGCCTTCAACACTGTTCTGACCATTTTAGTTATACTGATTTTTAACTATATTGTAGTCGTAATGGTTTTCCCGCTTTATAACATTCTCCCTCGATACATATTAGAGTGCTACATCATTCCCATCGGCCTCACCTTACTTACCATGAGAATCTGTATGCATCCACTGCTCTTTCTGTATAGTGCGGGAGCAATGTCTTGCTTGTGAAATTCAAACTAGGAAGTGTGGGTCAGACAAAACCTCCTGTGCATGACATTTGAgttattattctatttattattattactattactagtaAAAATGGTATGAGTAGTAGTTTGGTTTGGTTAGTCCAAAGTCCCTCTCTGGAATTTCAATTCATACCAAGTGCAATTCTACTACTTTAAAattgtttacactttatttgaaataaacttttaattcTCTGAATTTTTCCCTGGAGTGTAGTTGAACACATGTACATTGATAACGTGCCTCTACAATGTCTTGACAACATTTTCTGAAGTCTACAAATATGTGCCACAAAGCCGTATTGGTCTGTGTTCACCTTGCTGCAATGTtgccacatttttatttatttagcatgtgttttagtgtgttttaatttttatgatccttatttttatatacctttaatatttttttttaatctgacgTATAACATCATCTCCAAAAATATATTAGACAATTTTACAGTTTTGATAGTTTCTTCAATCTAAACTGGTCTcatttatacatatgtattttattgttggatattgttttgtatgtatttgaagAGCAAGGTGTTGCTCTCTCTATCGTGTGTCTGTAATGTGCTTTGGGATGTCCTGACATAAATgctctatataaaataaagatgctgATTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72912 lncRNA upstream 201652 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 212523 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 252560 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 447330 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 683966 43439399 ~ 43444317 (+) False AMCG00009647
TU73083 lncRNA downstream 27331 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 182997 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 186117 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 244343 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 244343 44386497 ~ 44407568 (+) False G58522
AMCG00009674 mRNA upstream 5352 44113411 ~ 44122931 (+) True AMCG00009674
AMCG00009675 mRNA upstream 15626 44103796 ~ 44112657 (+) True AMCG00009675
AMCG00009676 mRNA upstream 28708 44091540 ~ 44099575 (+) True AMCG00009676
AMCG00009669 mRNA upstream 76748 44025544 ~ 44051535 (+) True AMCG00009669
AMCG00009667 mRNA upstream 106029 44013726 ~ 44022254 (+) True AMCG00009667
AMCG00009679 mRNA downstream 18428 44160582 ~ 44161239 (+) True AMCG00009679
AMCG00009681 mRNA downstream 57362 44199516 ~ 44205254 (+) True AMCG00009681
AMCG00009684 mRNA downstream 79205 44221359 ~ 44222213 (+) True AMCG00009684
AMCG00009682 mRNA downstream 93397 44235551 ~ 44254047 (+) True AMCG00009682
AMCG00009680 mRNA downstream 122905 44265059 ~ 44281187 (+) True AMCG00009680
TU72919 other upstream 192521 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2050042 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3133624 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 4023335 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 4179083 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 244343 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 425211 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 442408 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 490596 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 913911 45056065 ~ 45057874 (+) True G58747

Expression Profile