RNA id: AMCG00009674


Basic Information

Item Value
RNA id AMCG00009674
length 2073
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00009674
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44113411 ~ 44122931 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGTaaaagtgtgtttatatgttgtgaatgttgttttgatgtctttcatgatttatGCTCATACcgattaaataattatataacacAACCCCTTACGGGAACTGACCACTCCTCCTCTCAGCAGTGTGCAGTTCATTTGAAGAGACTCACAGTGCACACTTAATCCCCTGTGGATGTGTTTTTATGAACTATGAATCACATCCgctgtcattttatttgaatgatgatgatgatgaggaggaggatgaatAAAACCGCGTCGCGCAAACCAGACTGCTTTCGGCTACCAGCGGTCGGACTATTTAATTTGcactttaattacaaatactgcTTTGGTGTGGTGGTGGACAAGTTAAGGAATAGCTCATGTTTTGTTGATTAAGAAGTATAGTTTGCGGGGGAATCTACAGGCATTTTTCAGACGTGTTGTCCTAATAAACTTGTCGGAAAGCGAAAGCAGCGCTGAAACTCTGGACTGAAGTGCTCCGATCCAGGCCGTGTCAGGatattgtcttttaaaagcCTTTCCTTCAACAGTACTGAGTTTGGATACAATACTTAACACCGATATACTGCGATCCCAAACAACTGCGTTAGTTCCTGCTCTGTAGAAAGTGCGCAtatcagtgttttgtgtttttaaccgTAATTATTTGCTAGGTTGGGCaggatatatgtttattttagttttttactctTCCATAAATATGACTGCCACCGACATCtacaaaataatgcaacaaTAACAGCACCGAATCTGTTGCTAAAGCTATAGGGTCGACAGtagtaaaacatcaaaatacaatCCCAAGGTCAACCCAAATGAAGCCGTGCATAAGGAAATGAGGAAACTGTGAGCAGCAGCACCCTTACACAGAGAGATGTTGGGGTGTGGAACAAACTAGCAGGTAAACAGCTGGTGCACACCTGCCGGTGCGGGTAGAGCATGAACGGGTGGATCAGGATGCTTTGGGTTCTCCTGTGTCTCCCACTGTGCGATTTCTTCAGCACTTCGACTGTCACCCTTGGCGTTATCACATGGAAGATGCTGGAGTTCTGTGTGCAGAAGCCCAGCATCTCCATCAGCGTAGTTACAGATGAGGTGAAAAGAGAGCACAGGTTTGCCGTCACCTGCTCCACTGAGTCGCAGCTCGGGGTCGCTTCCTTCCAGCTGAAGGTGGAGAACAGCTGGACCCAGACAGTGATCACACACAACGGCTCAGCCACCTTCTTCGTCCCACCCGCCAAGAACTACTCGTGCCGCTACGACTACATCCTGATGAACCGCTGGCTCCTGTCCCCAGAGAGTGACGTCGTCACAGTGCCTGTGGACTGGTCGAAAATCACCCGGTGGGTGGTGCTAGGCTGTGGTTTTGTGGCAGCAGTCGCTGGCGTCGCCTTTTGGACGTTCAAGAAACAGTCGAAAACCCATCAACTGGAGAGGGCTGACCGAGCGTGTGAGACCAACATTTATACAGACATACCGCTAACCTAAGCGGACAATGTTTACAGaggaatacacattttaaaagtaagGCTTTAGTCTACTCCAGTTGAGTACAGAAGACCTCTGTGAGATGAGCTTAGTTACTGAATCAATGTTTTGTGTCAGATAAACGATGGCGAAGATGGCACTGAGTAGGTATTTGAGTCTTCCAGCAATCAAGGCTAACAGCTGCTCATGCTCGATACAGTGACCAATGAAAGGAGAGCAGATATGTGAAATCTTTTGAAGAGccagagatttttttaaaatcctaATGTTAGAAGATGGTGTCTACCTCATTCTTCTGATGAAGTACTATTCTGAGACAAAGTGAGTTCCCAAAATGTactatttgctttgtttaaatgtgtgtctTATGGTATTTCAATACTATATATGAGTCTGTATGttgatatgattattatttatctgaaccatttaatatataaacaatgccCACTATCTGCCGTGATAGAAATGAATGTTAagtgttttatgatttttttatttgtttgttttctatttattatttgcacGTTAAGACCAATTCCATGTATGTGTGATAATAAAGCATCACATCGTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72912 lncRNA upstream 186780 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 197651 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 237688 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 432458 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 669094 43439399 ~ 43444317 (+) False AMCG00009647
TU73083 lncRNA downstream 46554 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 202220 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 205340 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 263566 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 263566 44386497 ~ 44407568 (+) False G58522
AMCG00009675 mRNA upstream 754 44103796 ~ 44112657 (+) True AMCG00009675
AMCG00009676 mRNA upstream 13836 44091540 ~ 44099575 (+) True AMCG00009676
AMCG00009669 mRNA upstream 61876 44025544 ~ 44051535 (+) True AMCG00009669
AMCG00009667 mRNA upstream 91157 44013726 ~ 44022254 (+) True AMCG00009667
AMCG00009668 mRNA upstream 100111 44006914 ~ 44013300 (+) True AMCG00009668
AMCG00009673 mRNA downstream 5352 44128283 ~ 44142154 (+) True AMCG00009673
AMCG00009679 mRNA downstream 37651 44160582 ~ 44161239 (+) True AMCG00009679
AMCG00009681 mRNA downstream 76585 44199516 ~ 44205254 (+) True AMCG00009681
AMCG00009684 mRNA downstream 98428 44221359 ~ 44222213 (+) True AMCG00009684
AMCG00009682 mRNA downstream 112620 44235551 ~ 44254047 (+) True AMCG00009682
TU72919 other upstream 177649 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2035170 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3118752 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 4008463 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 4164211 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 263566 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 444434 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 461631 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 509819 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 933134 45056065 ~ 45057874 (+) True G58747

Expression Profile