RNA id: AMCG00009675


Basic Information

Item Value
RNA id AMCG00009675
length 2673
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00009675
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44103796 ~ 44112657 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGCCAGGGGTCACCAAACGAGGTTAGGGGTGAAGCAGAGAAGCAGCTGCCCGGGGCTGAAGGGAGGGCGGCAGCGAAAGAGGGGTTTGGGAGGGTGTGGCCCACTGCCAGCACTGCGGGGCATGAGCCGATCATGCATGGCAAGGAAAGTGACGGGGGCATCGGGGGCCTAGGATGGGTCGCGGCCCATGCCAAGTGGCACACCTGTCCGGACAGAAGGCAGGATAGTGGAAAAGGACGTAGAGTAGACATGGAGGACGGCGCTGGGCCCGGGGGAGTGGAGGGAGAACGGGAGTGGAAAGGTGGGGGTGGAGCGAGGGGGGGGGAACTCAAGGATGCTGGACAggaacaaagaaagcaaaagcaTGTAAACAGCGGTGGTGGGGGACAGTGGGCAGGAGCCACCAAGGGAGGAGGGAAGCGGATCCCAGATGCCCACGCAGTGCCCGTGTTTTGCTCCGGGAAGAGCAGCCCCGCGTCACGGGTTTTCACAGCAGTACAATCACTCTACCGTGTTATGAAGCAGCTCTCTGTGGGATTGCTCCGGAGCACAATGCTGAGGTCTCTGCTCATCCTCTTACCCGGCCATGTGTTTGCCATCCTGGAAGCCCTGCGTTCATTAGGGGTGGCAGTGAAGAATGGAGAGCCAGAGGTGCCAGAGAGACCCATCATCTCCCTGCTCTCTCGTCACCTTTCCGTCTTACCTGGAGACACGATCCGGTTCAGCTGCACGGCCCCCTCCGCCGTCTACACCAGCTTGGAGTTTGACTGGTACAGGAGCGGAGTTGGGAACCCCATCGAGACCAAGAGGGCCCTAGCCCTGAAGAAGAAAGTGGAGCTGACCGTGGAGCGAGTGGACACGTCTCACCAGGGTGGCTACAGCTGTCTGTACCGAGTGAAGATCAACGGAGTGAACGTCTCATCTGCTCTCAGCAACTTCATCCCCATCACTGTGGAGGTGACCAGAGGGGACAGTTTTACCATCAACTGCTCCACAGCTGCCCAGTTCCCCGGTGGCACCTTTCAACTCAAGGTCATCCGATCAGAGGGAGCCACCCGCCAGTTGGCTTCAGCCCTCAACCACTCTGCCACCTTCTCCTTCCCCTCGGCTGACTCCACCAACGAAGGATACTACTCCTGCCTGTACGAGACTCAAGTGGCCGGGCGCACCTTCTGTTCCCGGGAAAGCCGTCTGTTGCCCATATCCGTGAAAGaGTCTCTGATGGTCCCTATAGTGGCCAGCTGGGTGACTTCAGCTGTGATCTTCATCCTGGCTGTGTTGGTTATTGCCCTGGTGGTGTgtaagaaaaggaagaaaacccGCGAGCTGGAGAGAGCCAGCCGATCCTGTGTAGAGAACACATACACCGAATTACCACTGATATAATCAGCCGGTGCTGAATGGGCACAATATGGAAACCAAGGTGAGAGGAAGACTTGGCGACAACTCCATTGAGGAGGGCAAGAGAGACAGCAGGACCTGAGCAACGtagactaataataaaaaagggacGGGAGCAGGGGAGTGTGACTACAAGAACTCTGTTCATGCAACACAAAGACGCTGATCCCCAGAGATGTGGGCGGAGGAGAGTAACTAGACTGTACCCTTCAGCAGCAGGCATGGAACAAAAGGCACcctcagtccagtccagtatgAAAGGGTAATCTGCCCTCAAGCACAGTGATTAGTGAAACCTGGGGAGCCCGTTTGGACCCATTTTCTAACCTCCACAGAGCACTGACTTGAGCAGTGAGTTTGCGGTGCTGGCCTTGGGGGATAGAATTGGCATGTTTCAGTAAACCCTTAGCTTCAGATGGATCCTATATATCAGCGTTGAAAGACAGGTACTCCGTAAACGGTAAATCGTTCCAGGAACCATTTGCAGAGGGAAATGTGACCTTTCCAAAAAAGTGATCGACTGGACGGAAATAAGGAAGCTATAGACGAGGTGAGGCCCAATGATCACCTTAGATCTTTGGGCTGCTTATTGATCCAGGGGCCTGGTCAAGATACCACATCCAGTCCTGTGAATAGTTATTCATGAGTGGATCCATAATTGACACTTGTTTTCTGTCTGGGTTACCCACCCAGATATCTAAATTCCTCAATCAGGTAGAATTGTTAAATGTAGattcaaaacatttgtatttttttgtgttttttattattattcaaaagcACAGTTTTGACACTCGTGGTGTATGATAATtattttgacattgacatttgacatttttatttcatgtgttgtatgaatcagatttttttttctctctcaaaagATAGTGTTGTATTTTCACCCTTTGTGCACTGCAAACCACTTTAGACTGACTCATATAAATCTCACAACCACTCTTTCTGGTGTTACAGGAATTACTATTTAAACACTGTCTTTGGCAAGGTatttctaataatatatttattcacttGATTTACACTTTTGTAAGTTGATATCAATGCCTACTTTGCGTagttttttactgtattttgttaccTTATTTGCACTATTTGCATGTGTATCtgatttgctttttgtttaaacCCCGGTGATGCTTCCTGTAGAAAACTGGACACATActgatgggtgacaaattaaaggaaaaacccacatacagtgtctcagtaaggtgttgggcaccacgagccgccagaacagcttcaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72912 lncRNA upstream 177165 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 188036 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 228073 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 422843 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 659479 43439399 ~ 43444317 (+) False AMCG00009647
TU73083 lncRNA downstream 56828 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 212494 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 215614 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 273840 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 273840 44386497 ~ 44407568 (+) False G58522
AMCG00009676 mRNA upstream 4221 44091540 ~ 44099575 (+) True AMCG00009676
AMCG00009669 mRNA upstream 52261 44025544 ~ 44051535 (+) True AMCG00009669
AMCG00009667 mRNA upstream 81542 44013726 ~ 44022254 (+) True AMCG00009667
AMCG00009668 mRNA upstream 90496 44006914 ~ 44013300 (+) True AMCG00009668
AMCG00009670 mRNA upstream 111746 43978592 ~ 43992050 (+) True AMCG00009670
AMCG00009674 mRNA downstream 754 44113411 ~ 44122931 (+) True AMCG00009674
AMCG00009673 mRNA downstream 15626 44128283 ~ 44142154 (+) True AMCG00009673
AMCG00009679 mRNA downstream 47925 44160582 ~ 44161239 (+) True AMCG00009679
AMCG00009681 mRNA downstream 86859 44199516 ~ 44205254 (+) True AMCG00009681
AMCG00009684 mRNA downstream 108702 44221359 ~ 44222213 (+) True AMCG00009684
TU72919 other upstream 168034 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2025555 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3109137 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3998848 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 4154596 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 273840 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 454708 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 471905 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 520093 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 943408 45056065 ~ 45057874 (+) True G58747

Expression Profile