RNA id: AMCG00009676



Basic Information


Item Value
RNA id AMCG00009676
length 1008
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00009676
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44091540 ~ 44099575 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTCTGCTTCTgtctcctcccaggtggcctcTTTGGATTTAATGTCCCGGTGGCAGAGACAGTCCATTTCCGCTGCACTGCTCCCTCCCTGCTCTACACCAGCATTGACTTTGACCTGTACCAGGACACGGCCGGAAACCCCATTGTGACCCAGAGGGCTGAATTTCCACAGACCACAGTGGAGCTGAATGTGTCTAATGTGGAGCCGTCGCACCAGGGCAGCTACAGCTGTCGGTACAGAGTCCAGGGGGGCGCAGAGGCCTACAGGTCACCTCACAGCAACTCTATAACCATCACCATGGTGGTCCTTCAGCAGCCCAACATCTCCCTCAGCCTCCCTGCTGCAGAAGTGACCAGGGGCACGAGCTTCAGCATCACCTGCTCCACAGAGCCACAGTACGCAGGGGGCACCTTTCACCTGATGAGGATTGAGCCCAATGGAACCACCATCCAGTCAACACCAGCTGTCAATCACTCTGCCACCTTCTCCTTTCCTGCTGCTGAGTATTCCCACCAGGGGAATTACAGCTGCCGCTACAACACAAGAGTGTCCACTCGTAACTTCTCCTCTCCTGAAAGTGATGTGCTGGTCATCACAGTGAGAGGTACTATGTCCACAAGATCAGTCATTTATAGTCTAAATACAAGGACAGTCGTGTCCGGGGTGACCTCGGTGCTGTTGGTGGTGGTGATATTCCTTGTCATCATCCTTGTGATGCGTAAGAAAAGGAGGAAAGCCACAGAGctgaagagagagagcataATACTGGCCATGAACACCTACACATGCAACCAGTCCAGGCACAGTGAGGATGAGGACGAGTTTGAGgatgatgaggatgaggatgattACGTGAACGCAGAGGTCTTCAAAGGGAAGCCTGATTACGCAGAGGAAGATGAGGACAGCGATGACTATGAGAACTCAGACCCCTCATACATGAAGGCACAGGCTTGCAGAGATatagaggaggaagaagagaatATATACCAAAACTATGGCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72912 lncRNA upstream 164909 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 175780 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 215817 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 410587 43678351 ~ 43680953 (+) True G58291
TU72836 lncRNA upstream 647223 43439399 ~ 43444317 (+) False AMCG00009647
TU73083 lncRNA downstream 69910 44169485 ~ 44169789 (+) True G58467
TU73142 lncRNA downstream 225576 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 228696 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 286922 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 286922 44386497 ~ 44407568 (+) False G58522
AMCG00009669 mRNA upstream 40005 44025544 ~ 44051535 (+) True AMCG00009669
AMCG00009667 mRNA upstream 69286 44013726 ~ 44022254 (+) True AMCG00009667
AMCG00009668 mRNA upstream 78240 44006914 ~ 44013300 (+) True AMCG00009668
AMCG00009670 mRNA upstream 99490 43978592 ~ 43992050 (+) True AMCG00009670
AMCG00009661 mRNA upstream 139911 43940293 ~ 43951629 (+) True AMCG00009661
AMCG00009675 mRNA downstream 4221 44103796 ~ 44112657 (+) True AMCG00009675
AMCG00009674 mRNA downstream 13836 44113411 ~ 44122931 (+) True AMCG00009674
AMCG00009673 mRNA downstream 28708 44128283 ~ 44142154 (+) True AMCG00009673
AMCG00009679 mRNA downstream 61007 44160582 ~ 44161239 (+) True AMCG00009679
AMCG00009681 mRNA downstream 99941 44199516 ~ 44205254 (+) True AMCG00009681
TU72919 other upstream 155778 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2013299 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3096881 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 3986592 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 4142340 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 286922 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 467790 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 484987 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 533175 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 956490 45056065 ~ 45057874 (+) True G58747

Expression Profile