RNA id: AMCG00009677


Basic Information

Item Value
RNA id AMCG00009677
length 1287
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00009677
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44051410 ~ 44064467 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTTTTGACGCTATGCCTGAAACCTCCACGGCCACTGTGAAAGCTTCAATAGGAAGCGGCCCCTTCGGATTTCATGTCCTGGTGCAAGATCATTTCCGGATCAGACTGGTCAATGGGAATGATCAATGCTCTGGGAGAGTGGAGGTCTATCACAGTGGCCAGTGGGGGACAGTGTGTGATGACAGCTGGGACCTGAAGGATGCTGCAGTGGTGTGTCGACAGCTGGGGTGTGGGAGTGCAGTGTCTGCCCCAGCCAGTGCCACATTTGGACAGGGGAGTGAGCCCACTTGGCTGGATGATGTGGAGTGTTCAGATACTGAGGGCTGCCTTACTTTTTGTAAACACAGAGGATTTGGAAAAGAAGACTGCAGTCACAGTGAAGATGCTGGAGTTGTGTGTTCCGATGCCATGAGGAAGCCTTCTCTCTCCTTGGTCACGTCATATTCTGTATTTGCACCTGGAGAGACAGTCTGTTTCCGCTGCACTGCTCGCTCCCCCCTCTACACCAGCATTGACTTTGACCTGTACCAGGACATGGCCAGAAACCCCACTGTGACCCAGAAGTCTGGATCTTCACAGATTCAAGTGGAGCTGAATGTGTCTAAAGTGGAGCCGTCACACCAGGGCAGCTACAGCTGTCGGTACAGAGTCCAGGGAAGCTCGGGGACCAAGCAGCTCAGCTCGCAGCGACTCTGTTCAGATTTCCATTGTGCTCGTACTGGAGAGGTTGCCTGGGGGGACAGTGTTGGCATCACCTGCTTCATCTCCACGACCACCTTCACCTTTCCTGCACTGGACTTTGTCCACAAGGGCGATTACCACTGTCACTATCAGACACAAGTGTCCAGTCGCACTTTCAGCTACCCAGAGAGCGATTCTCAGCCCAACATCTCCCTCAGCCTCCCTGCTGCAGAAGTGACCAGGGGCACCAGTTTCAGCATCACCTGCTCCACAGAGCCACAGTACGCAGGTGGCACCTTTCACCTGATGAGGATTGAGCCGAATGGAACCACCATCCAGTCAACACCAGCTGTCAATCACTCCGCCACCTTCTCCTTTCCTGCTGCCGAGTATTCCCACCAGGGGAATTACAGCTGCCGCTACGACACAAGAGTGTCCACTCGTAACTTCTCCTCTCCTGAAAGTGATGTGCTGGTCATCACAATGAGAGTCGTGTCCGGGGTGACCTCGGTGCTGTTGGTGGTGGTGACACTCCTTGTCATCATCCTTGTGATGTgtaagaaaaggaagaaagccACAAAActgaagagagagagcataATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73002 lncRNA downstream 73924 43977285 ~ 43977486 (-) True G58395
TU73001 lncRNA downstream 78780 43972264 ~ 43972630 (-) True G58394
TU72997 lncRNA downstream 103888 43938921 ~ 43947522 (-) True G58391
TU72982 lncRNA downstream 175671 43873781 ~ 43875739 (-) True G58377
TU72977 lncRNA downstream 180293 43870354 ~ 43871117 (-) True G58374
TU73065 lncRNA upstream 32809 44097276 ~ 44104710 (-) True G58452
TU73069 lncRNA upstream 44869 44109336 ~ 44109715 (-) True G58456
TU73070 lncRNA upstream 45502 44109969 ~ 44110283 (-) True G58457
TU73073 lncRNA upstream 51183 44115650 ~ 44121067 (-) True G58459
TU73143 lncRNA upstream 260690 44325157 ~ 44325573 (-) True G58511
AMCG00009671 mRNA downstream 44607 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009672 mRNA downstream 56562 43991714 ~ 43994848 (-) False AMCG00009672
AMCG00009664 mRNA downstream 115652 43933227 ~ 43935758 (-) True AMCG00009664
AMCG00009666 mRNA downstream 120692 43924421 ~ 43930718 (-) True AMCG00009666
AMCG00009663 mRNA downstream 132640 43902295 ~ 43918770 (-) True AMCG00009663
AMCG00009678 mRNA upstream 9383 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009683 mRNA upstream 191948 44256415 ~ 44264122 (-) True AMCG00009683
AMCG00009690 mRNA upstream 220411 44284878 ~ 44293118 (-) True AMCG00009690
AMCG00009693 mRNA upstream 259518 44323985 ~ 44328354 (-) True AMCG00009693
AMCG00009692 mRNA upstream 274596 44339063 ~ 44342291 (-) True AMCG00009692
TU73015 other downstream 55756 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 106113 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1377703 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 3893939 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5213846 38835316 ~ 38837564 (-) False AMCG00009472
TU73231 other upstream 443786 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 477427 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 501602 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 718451 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 1256376 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile