RNA id: AMCG00009680


Basic Information

Item Value
RNA id AMCG00009680
length 4789
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00009680
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44265059 ~ 44281187 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAACGCCTTGAGGTTTGGAGAGAGGAAAAGACTGCCCCTTTCAGCCcgagaattaaatatataaatatatatgtatatacccGCACCTTGATCTCGTCCCACAACAACATCCTCTGTCTGAGGCTCACAGATCTCTGTCCATCGCCTGCGCCGGGTCTGTGAGAGCTGCGCagcgcacgcacgcacgcattGCTGCACCGAGTGCGCCGGGGACTTGCGGGACTGGACGGCGGGGACATCCACCAAGAATGGGAGACATGCAGAAAATTAGACTCCTATGGCTCGTCTTGCTGTCCCTCACGACGTTATCACGGATGGGATTCGCCGAGGAATACAGAGCCCGTCTCCTAAGGTCGCCGAATAACGGAGGCGCCGGTGTGTACCTGCAGCGAATGAAACGTCAAACCAGTCAACCGAAACCAGAGTTGAAGCTCACGGAGTTCCACGTGCGATCTACGGTCGTGTCCCGCTACGCCCGGACCACGGTGGAGAGTACAGTGTGGAACCAGCTTCCTGTCCACAGAGAGGCTGCTTTTGAAGTGGATCTTCCCAATACAGCATTCATTTCCAACTTCACCATagagagggagacggagaaGTTCCGGGTGGCTGTCAGCGTACCGGCTGGCACTCAAATGACCTTCACCCTGACCTatgaggagctgctgcagaggcggCTGGGCCACTACGAGCTGGCTCTGAGCGTCAGGCCTGGGCAGCCGGTGCACAACCTCACCGTGGAGGTCACCATCTCGGAGAGGACGGGCATCAGCTTCCTGCGCGTGCTGCCCCTGCGTACCAACAAGCTGCTGACCAACACCGTGCGAGGTGAGGGAGTCTGGGGGCACAATGCCAACTGCGCCCGTGTCCGATTCACCCCCACTGTGCAGGAGCAGGGCGCCGCCTCCCCGAAGGGCATCGCGGCCGACTTTGTAGTGCAGTACGACGTGGAGCTCAGCGATCTCATTGGGGATGTGCAGGCAAGAACATTAATGCACTACTGGGGTGGGCGGGGGTTCAGTGAGGTTGAAGAGATGCATGCAATTTATGACGGCTACTTTGTTCACTACTTTGCTCCTCGAGGTCTGCCCATCGTTCCCAAGGACGTCATCTTCGTGATCGACATCAGCGGCTCCATGGTGGGGACGAAGATAAAGCAGACCAAGCAGGCCATGACCACCATCCTGGGCGACCTGCGAGAGAGTGACTACTTCAACATCATCACCTTCTCTGACTCCATCAAGAGGTGGAAAACTGCCGGTACCATCAAAGCCAGCGCTCAGAACGTGAAAGATGCCAAGGAATTTGTGAAGAAGATCAACGCAGACGGATGGACGGACATCAACGCGGCTCTGCTCAGCGCTGCTCAGCTGGTCAATGCCAATACAGCCACAGAAGGCAAAGCCAGCAACCGTGTCCCCCTCATCATCTTCCTGACGGACGGGGAGCCCACTACCGGGGTCACGTCCACAACCAAGATCATCCAGAACGCCAAGGAGGCCCTGGGCTCGGCCTGTCTCTTTGGCCTGGCCTTCGGGGATGACGCAGACTTTTCCCTCATGCGGAGGCTGTCCATGGAGAACCGGGGAGTGGCACGCATGATCTACGAGGACGCAGACGCCGCCTTGCAGCTGAAGGGCTTTTACGACGAGGTCGCCAGTCCCTTGCTCTTCGACATCCAGCTCAACTACATGGACAACCATGTCTACGATGTTACCCAGGCCCTTTTCCCCAACTATTTCCAAGGCTCAGAGCTGGTGGTGGCCGGGCGGGTCAAGCCTGGGGTAAAGGACCTCAGGGTCACGTTGACAGCCACAGATTCCCAGAAGCAGCTGTCTGTGGAGAATGACGTGGCTGTCCAGGACTCAGGCAACGCAACCTTCGGGTGCCCCGGAGAGCTTGGGGGCATCTCCAGCTTTGTCCGCCGCTTGTGGGCCTACTTCACAATCAAGGAGCTCCTCGAAGCCAAATTGAACACCACAGATCCAGCCACCCAGCGCATCCTGACAGAGAAGGCCACCAACCTCTCGCTGAAGTACAACTTTGTCACTCCCGTCACTTCCCTGGTGGTGGTCAAGCCAGAGGAGACACCCACAAACACTACCACCACCAGCAGTACCACCACCagcactaccaccaccaccagcaccaccacaacaaccaCCACGACCACCACTGCTCTACCGATCCTCAAGACAAGTATGGTCGCCCACGCCGCCACCACCCCCCAACTTCCCCTTAAAACATCTCCCACCACCAGCGCCCAAAAAAACCTATCCACCCCCAGGACTAGCAAACCCAAGGCCAAGCCCCCCAGCCTCCACACCACCAGCCACCCCTCCATGCTCCTCCAGACTtcctctcccttcccaggcaaaGGGCTCGCCCATCCTGAATCTGAGAACATCACCTCCGCCCCCGAGGGCCGTCTCACCCCCCGCCTCGCCACCGTCGCCTCCTCCAGCCACACAGATGCACCCCGGGCCCCCTCTACGAACCCGCCGCCGCCCCCCCTGGGCACCACAGAGCCGTCCCCCAACACTGAGGTGGCCATTGATATTGAAATGGCCACTGTGATGGAGGACACTTTAATGCCCATGCTAACGAGCCTAGACCTAGAAGTGGAGGCGACCGCTGACTTAGTGGGTCACTATGATATTGGTTATGATGATTACATCGAGGGAGGACAAGATGCTGACTatGTGGACACCGCAAACCTCCTAACAGGTCACTATGATATTGGTTATGATGAATACATCGAGGGAGGACAAGATGCTGACTCGAATTTGCAAATTGCTGATGGAGACCCCCATTTTGTGGTCCACCTGCCCAGACTAGGGGAGAATATCTGCTTCACTATTGACGGGGAGCCCAATGACGTTCTCAGGCTGGTCGATGACCCAGTGAGAGGCATAATTGTGGATGGACATTTAATGTGGGCCCCTTCCAAAGTAGGCTTTGAAGACCATTCCAGGACTTACTTCGATCAGCTGATCTTCTCCATGGAGATGGAAGGGGCAGGGCCCTGGGTAGTCACGGTATCCCTGACCTCCATCGTCCTGGAGGGTGAGGATCGGGTTATGCTGCCCGTTGATAAGCCGGGCTCCGTCAAGAGGCGGGATGTGAAGATCCAAGTGGACGATCAGCTGCGAGCCTGGGTGATGTTAAGGCGGGACCTCCAGTTCTTGGTTCTCTTCCATCACTACCAGCACCCCACCTACCTGCAGCTCAGCCATCTTGGGATCTACATCGCCAGTGGACAAGGTTTATCCCCACGCACGAAAGGCTTATTaggCCAGTTCCAGCATGCAGAGATCGATATCGTGAGAAGCAAAGATGCCACAGGCTCCTCCGAAGCCAACGGGCAGGAGAAAGCAACCACAGGAGAGCTGAGGTGGCGTGGGGAGAAGATCCCAGTCCTCCTGCAAACCAAAAGCCTGAAAGATACGGTGCAGAAGAGGCACCCGGGCAACTGCTGGCTGGTCATTAAAGCGCAAGTGGAGCGGCTGGTCAACGGCACCTACCGCGACTATGTCGTTGGCCACAACTGAGTAGCGACCTTCTTGTTTTAGGTGCTTCAAAGGACAATCAAGCATTCCAACTTGGCTTGGCTTTAGGACCTGTCTGCACCAACGGATGCCACCACCCTACTCCAATccacccctcccctcctccttctTGCTTTCACTTCTCCATTACTACAAGATTTAGGAGtttcctatatattttttttcgtAAATTTGGATTCAGACCTTTTGTAGACAATTCTGGGCTAAGCTAAGCTATCTGTAAAGAAGTTATGAAAGCCCTAAAATCTTCTAAGCTGAAGTGGATGGGAGAGTCTGGGTCTCACTGTTAGTCACCAAAGGCTCTTGGGAGATGTTGAAGGCGCTGTACCCTTCGGAGTTGTTCATGAACACACTTTCCACACTTGTCAAAGCGAAAGGCCATGAACTCGGCCAATATAAGCAGaggaataaaaagaaacagtaaTGGTGTCTGTGAAATGATTAgggaaataaaactgaaaataatacagatgCTGTGAACGTCTGGTTTTATCTTTCAAGATAGGATACCCAGAAGCAGACCTCACCATGACACCCATAACAGATTACGATCACTACCTGTGATTGAGGCCAACTGcacagatatctttaaataactgAATCTGGTAAAGGTAATTGGGAACAAATGCCTGAATACCCATAATCCTTCAAGGGCCAGAGTTCCCATAAATCACCTGGCATTGATCAATAATTAACACATTCCCAGTCTTTTGGAATTGAGGACCTATAAGCCTACCTGGATAGGGGGGGGTCTTGGAGAGCGCGGTTGGAGAGCGCGGTTGGAGACTGCTTGTCCAGCAGTTTCAAGCGACATCACGGCGGTTTCAAAGACCCACTAAGGTCTCACTCAACGTGAATCTTGAAAAGCTGTACAACTGACATTCAACTTACTGGTTTCACTACAGGCCTGGCCAACTTCATAAGCACCATGTACCCATCCCTGTAACATCACTTTTCCTAAACACCAGGGATGTGTAACCTatcttaattattaatgtaaaaaaatatatatattttcatccaCTGGCTTTCTAAagttttgtaaattaatgttttattcacaATGCATCAAGTGAGCGGAAAtgggtttgtgttgttttaatagtgtgtaaaatgactgaaaatatgTCTGACTTGAGGGTCAAAAACCTTCTTCACATTGTAAAAGTGTTTTGTATATAATATGCCCTTCATACATAATACAATGGTTGTATTTAAA

Function

GO: NA

KEGG:

id description
K24516 ITIH6; inter-alpha-trypsin inhibitor heavy chain H6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73083 lncRNA upstream 95270 44169485 ~ 44169789 (+) True G58467
TU72912 lncRNA upstream 338428 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 349299 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 389336 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 584106 43678351 ~ 43680953 (+) True G58291
TU73142 lncRNA downstream 43964 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 47084 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 105310 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 105310 44386497 ~ 44407568 (+) False G58522
TU73169 lncRNA downstream 132085 44413272 ~ 44483247 (+) True G58527
AMCG00009682 mRNA upstream 11012 44235551 ~ 44254047 (+) True AMCG00009682
AMCG00009684 mRNA upstream 42846 44221359 ~ 44222213 (+) True AMCG00009684
AMCG00009681 mRNA upstream 59805 44199516 ~ 44205254 (+) True AMCG00009681
AMCG00009679 mRNA upstream 103820 44160582 ~ 44161239 (+) True AMCG00009679
AMCG00009673 mRNA upstream 122905 44128283 ~ 44142154 (+) True AMCG00009673
AMCG00009687 mRNA downstream 22039 44303226 ~ 44314149 (+) True AMCG00009687
AMCG00009686 mRNA downstream 33785 44314972 ~ 44322797 (+) True AMCG00009686
AMCG00009685 mRNA downstream 83344 44364531 ~ 44372415 (+) True AMCG00009685
AMCG00009688 mRNA downstream 92514 44373701 ~ 44381036 (+) True AMCG00009688
AMCG00009689 mRNA downstream 101370 44382557 ~ 44386172 (+) True AMCG00009689
TU72919 other upstream 329297 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2186818 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3270400 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 4160111 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 4315859 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 105310 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 286178 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 303375 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 351563 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 774878 45056065 ~ 45057874 (+) True G58747

Expression Profile