RNA id: AMCG00009681


Basic Information

Item Value
RNA id AMCG00009681
length 1530
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00009681
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44199516 ~ 44205254 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCCTTTCCTCAACTCAACATCCGTCCTCAACACCACCAACAATGCGGCAATGTACGGGAATATCTGCAAGGACAGAACTGCTGGTTACATGTTCTTCATGATAGTGCAGTCCATCAGCGGCATCGTGGGTTTTCCAGCCAACCTGAGGAGCCTGCAGGTGCTGCGAGGGAGGGTGGCTGAGTCCTCCACTTCGGACATCCTCATTGGCAACCTTGTGGTCATGGACATTCTGTTTTGCCTGATCACTCCTGTGACTGTTGTTACCTTTTTCCATGTGAACAACCTGTACATCAAGAAGGTTATGGGTTTTTTCTTCGCTCTCAATGAGACTGGGGGTCCGTTGTTCCTCTGCTGCATTTGCCTTGACCTCTACGTAGCCGTGCTTCACCCAGTCCATTTCTTGCGCTACAAAGATGTCACATACAGAGCCGGCTGCTCAGCTGCCATTTGGGTCATTGCTGTGGTCATATCCTTCTACTTAATCTTCGAATCAGGTAAACAGGGTTCTTACATCACAACCGGAATCTTCTGCAGCACCTTCATATTGATGCTTTTCTGTAACCTCTCCATACTGTGGGCTCTTAGGCGGGCTGGACCTGGTGCCCAAGAAATGCACCCCATTAAGAAAAAAGCCTTCAACACCGTTATGACCATTTTTGTTATCCTGATATTGAACTATAGTCTACTCGTAGTGCTTTTCCCAATTGATGACGTTCTCCCTGGATACATATTAGAGTGCTACATCATTCCCATCGGCCACTCCTTAGTTACCATGAGAGTCTGTATCCAGCCCCTGCTCTTTCTCACAAGCCTTGAAGAGCTTCAACCCATGGATCCCTTCCTCATCAGCTCAATGTCTGTCCTCAACACCACCAACAATACGGCAACGTACGGGAATATCTGCAAGGACAGAACTGCtggttatGTGCTGCAGGGGAGGGTGGCCGAGTCCTCCACTTCGGACATCTTCTTCTGCAACCTTGCGGTCATGGACATTCTGTTTTGCCTGTTCACTCCAGTGACAGTCGTTCACTGTTTCCACCCAAACAACCCATATACCCTCAGAGCtgggatttttttctttgcgCTTAACGAGATCGAAGCTCCATTGTTCCTCTGCTGCGTTTGCCTTGACCGCTACATAGCCGTGCTTCACCCGATCCGTTTCTTGCGCTACAAAGATCTTGCATACTTGCATACAGGCTGCTCAGCTGCTGTTTGGGTCATTACTGTGGTCATCTCCTTCTACACGACCTTCCTGCAAGGTAAACAGGGTTTTTACCTCACAACCAGCATCTTCTGCAGTGCCTTCATATTGATGATCTTCTGTAACCTCTCCATACTGTGGGCTCTTAAGCGGGCTGGACCGGCTGCCCAAGAAATGCACCCCGTCAAGAAAAAAGCCTTCAACACCGTTCTGACCATTTCAGTTATCCTGATTTTTAACTATAGTCTATTCATAGTGCTTATACCGATTGAACATAGTGGGAAAAATGCCTTGCTTGCCAAATTCAAACTAGTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73083 lncRNA upstream 29727 44169485 ~ 44169789 (+) True G58467
TU72912 lncRNA upstream 272885 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 283756 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 323793 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 518563 43678351 ~ 43680953 (+) True G58291
TU73142 lncRNA downstream 119897 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 123017 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 181243 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 181243 44386497 ~ 44407568 (+) False G58522
TU73169 lncRNA downstream 208018 44413272 ~ 44483247 (+) True G58527
AMCG00009679 mRNA upstream 38277 44160582 ~ 44161239 (+) True AMCG00009679
AMCG00009673 mRNA upstream 57362 44128283 ~ 44142154 (+) True AMCG00009673
AMCG00009674 mRNA upstream 76585 44113411 ~ 44122931 (+) True AMCG00009674
AMCG00009675 mRNA upstream 86859 44103796 ~ 44112657 (+) True AMCG00009675
AMCG00009676 mRNA upstream 99941 44091540 ~ 44099575 (+) True AMCG00009676
AMCG00009684 mRNA downstream 16105 44221359 ~ 44222213 (+) True AMCG00009684
AMCG00009682 mRNA downstream 30297 44235551 ~ 44254047 (+) True AMCG00009682
AMCG00009680 mRNA downstream 59805 44265059 ~ 44281187 (+) True AMCG00009680
AMCG00009687 mRNA downstream 97972 44303226 ~ 44314149 (+) True AMCG00009687
AMCG00009686 mRNA downstream 109718 44314972 ~ 44322797 (+) True AMCG00009686
TU72919 other upstream 263754 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2121275 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3204857 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 4094568 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 4250316 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 181243 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 362111 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 379308 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 427496 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 850811 45056065 ~ 45057874 (+) True G58747

Expression Profile