RNA id: AMCG00009683


Basic Information

Item Value
RNA id AMCG00009683
length 1950
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00009683
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44256415 ~ 44264122 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaatatttttttctgaaaatgcttGTATCTAATACAAAGttaatgctatttattttgtttctctgacTCTTTAAAAAATCTTTAACTAAAAGCCTTTGGAGGACCCGATAGCAAATCCTTCTTCCACACATGGACCACTCTATGGTTGTCAGCTGAACTCGGTGGTTGTTAGTGACGCAATGATTGTGCGCCGTGTCGACGGGGAAGGAACTCAAATCGATCAGTTTGGATAAATAAAGCGGGAACATTGGGTTTAAAGTGTTGTGTTTAGCTCTTGGGCGACGATGTCTCAGTTTCGGAAGAGGATCTCAGCCAGTCAGAGCTCGCAGAACAAGTCACGCAAGCCGCAGACTCAGTCCCAGCCCCCGGAAGCAGACGATGACGATGAAGAAGTGTCCCTCACCCAGCCCAGCTCCTCCCAGCTCCAGAGGGGGCTGGAGCGTCTCACCCCTGCCCAAGTTGACAGCAAGATGGCTGAGGTTGTCCAGTTTATCCTGATCAAGGACCAGAAAAAGATGCCCATCAAACGAGCGGAAATTGTGAAGCAAGTCATCAAGGAATACAAGAACATCTACCCCGAGATCATGAAGCGAGTCAACAGGACTTTTGAGCAGACGTTTGGCCTCAAACTGGTGGAGATTGATGTGAAAAATCACACCTACATCCTGATCAACAAGCTCGAGCACGTGGACGGAGCCCCACTGGACCTCAACACAAGCTCACCGAAAACCGGCCTTCTGTTCGTCATCCTCGGCATCATCTTCATGAAGGGAGGAGTGGTGAAAGAGGCCGTCATCTGGAACACGCTGAAGAAGCTACGGATAGACCAAGGGGAGAAGCACGAAGACTTCGGAGACATCAAGAAGCTGCTGACGGAGGAGTTTGTGAGGCAGAAGTACCTGGAGTACAACCGCATCCCCCACACCGAGCCCCAGGAGTTTGAGTTCCACTGGGGGCTGCGGGCCGAGAAGGAGGTCTCCAAGCTCAAGGTGCTCAACTTCATCGCACAGCTGCACGATCAGCAACCTCAGACTTGGGCGTCTCAGCACAAGGAGGCGATGGAGGCCGAGGCGACGGCTGGGCCGAGAGTCTCTCTCTAGTGACCGTTGTGGCTGGAGGACTTGGAGAAGGGGGTTGTAGGGGGTTTGGGGTCAGCTGAACCAAAGAAGAATCCATGACGATCCTTGGTGCATTTGTGTGACAATGGCGTGTGCGTCTGCTAGGGCAGGCATTCGGAATATCCTTACAAACTCGTGAGATGGAAAACTGCTTCTCAAACTCGCCTCCCGGGATTGTGCGAGAAGCAGGTGCGGTGAGATTGTTGGAAAATCCTTCCCCACGGAGTGACAACGGCACTTCTGCGTTGAAGCTTGTTGATTTGATTAGGAGGAttctctgaaaaagaaagactggTCTAAACCTGAGTGTTTCATCTGGGGAATCTCCCTTGGAGCTGGTTTTCCCCTTTAGTAAGCAGTCATTGGCTTCCCAGAGTCAAGGCCCACAGACTCAGTGTGCGACTGAGCGCAGCGGACACATTGCACAGAAATATCGCTGCTGACTGAAGCGATTTAGTTCATTTAGTTAAAGAGTCTTGTTTTGGATTCACATTGTTGCATTccatacagtaaatatataaataaagatttttCAGACCTAGGAccaatactgtaaataaaattaaaatacatgttaaataagACACCTGGGAAATGCTCAATATTTTGGCTGACTCTTCTCCTTTGATGACTGGACAAACCCGGTTAACGCTGTCTTACATGAACCACTGACTCGGCTCTgcttaatattattaatgatctgttcttattttgcattttatatattttatggtgGCTTTGTACAGGTCTTTCATGCTTCAAGAGTTTGAAGGCATTGTCTTACatgagaaatgttttatattgtgtattaaattaagtaatactGACTCAA

Function

GO: NA

KEGG:

id description
K22823 NSMCE3, NSE3; non-structural maintenance of chromosomes element 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73073 lncRNA downstream 135348 44115650 ~ 44121067 (-) True G58459
TU73070 lncRNA downstream 146132 44109969 ~ 44110283 (-) True G58457
TU73069 lncRNA downstream 146700 44109336 ~ 44109715 (-) True G58456
TU73065 lncRNA downstream 151705 44097276 ~ 44104710 (-) True G58452
TU73002 lncRNA downstream 278929 43977285 ~ 43977486 (-) True G58395
TU73143 lncRNA upstream 61035 44325157 ~ 44325573 (-) True G58511
TU73196 lncRNA upstream 216930 44481052 ~ 44488354 (-) True G58548
TU73197 lncRNA upstream 216930 44481052 ~ 44526239 (-) False G58548
TU73236 lncRNA upstream 278821 44542943 ~ 44543177 (-) True G58585
TU73256 lncRNA upstream 394294 44658416 ~ 44659098 (-) True G58605
AMCG00009678 mRNA downstream 182299 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009677 mRNA downstream 191948 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009671 mRNA downstream 249612 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009672 mRNA downstream 261567 43991714 ~ 43994848 (-) False AMCG00009672
AMCG00009664 mRNA downstream 320657 43933227 ~ 43935758 (-) True AMCG00009664
AMCG00009690 mRNA upstream 20756 44284878 ~ 44293118 (-) True AMCG00009690
AMCG00009693 mRNA upstream 59863 44323985 ~ 44328354 (-) True AMCG00009693
AMCG00009692 mRNA upstream 74941 44339063 ~ 44342291 (-) True AMCG00009692
AMCG00009691 mRNA upstream 82348 44346470 ~ 44354753 (-) True AMCG00009691
AMCG00009697 mRNA upstream 237665 44501787 ~ 44512102 (-) True AMCG00009697
TU73015 other downstream 260761 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 311118 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1582708 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 4098944 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5418851 38835316 ~ 38837564 (-) False AMCG00009472
TU73231 other upstream 244131 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 277772 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 301947 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 518796 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 1056721 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile