RNA id: AMCG00009687


Basic Information

Item Value
RNA id AMCG00009687
length 1567
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00009687
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44303226 ~ 44314149 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTTGGACACGTTTCACTTGCTcatcatttttcattaattagGTTCACCGGAGGGATTCAGAGCTGTTTGGAGTTAAAGGGAGAAACTCGAGGGACAGTTGGCGAGATAATGGGAGATGTTAAAGTCCATCAGCCAGTGTCTCCAGTGAGGAACTTTTTTGCTGGGGGTGTCGGAGGAGCGTGCTTACTGCTGGCCGGACACCCGCTGGACACCATTAAGGTTCGACTACAGACTCAACCCAAAGCTGCCTATGGACAGCATGTTGTCTACACAGGGACCATGGACTGTCTCAGGAGTACGGTGGCTCGAGAGggcaTGCGGGGGCTCTATAAAGGCATGGCAGCCCCACTGGCTGGGGTGTCCCCCATGATGGCCATCGGTTTCTTTGGGTTCGGTCTGGGGAAGCGACTGCAGCAGCGAGACCCGGACAGCCCCCTCACATACCCACAGATCTACGCAGCTGGGATGCTGTCGGGCATTTGCACTACGGTCATCGTGGCACCGGGGGAGAGGATTAAGTGTCTTCTGCAGGTGCAGTCTACCTCCGGCCTGAGGAAGTATTCTGGTCCAGTGGACTGTGCTGTCCAGCTGTACAAACAGCAGGGGATTCGAAGTGTTTACAAGGGCACCGTCCTCACGCTCATGAGAGACGTGCCCTCTACCGGTGTCTACTTCATGAGTTATGAGCTGTTGAAGAACACGCTGACTCCCACAGGTCAGAGCGTTGACGAGCTGAGCATTCCCAGAATCCTCTTTGCTGGGGGCATGGCGGGCATCTGTAACTGGGCCGTGGCGATACCCGCTGACGTCCTCAAGTCCATCACCCAGACAGCCCCGGAAGGGAAGTACTCTGGATTCCGGGATGTACTCCGCGAGCTGGTGAGAGAGGAAGGCCTGCGCTCCCTGTACAAGGGCTTCAGTGCCGTGATGCTGCGAGCCTTTCCTGCCAACGCGgcTTGCTTCTTGGGGTTTGAAGTCTCTCTGAAGTTCCTGAACTGGCTGGCTCCAGATTACTGAAGGCAAAGGTCATGACCTCCTTGACACCTGCCAGTCCTCGTGTTCAGCCCAATGAACTTTTACTGGAGATCCTTAAAATCAAATCCTGTTCATAGTAGAacaggattattattttaaccaaGGTGCCCCTTAACCAATTAATCCATAAAGTCAAAgtctataaaaaaaacttgGCCTGTGGATGTTTCAAAACAATGGTTTattaattatagaaaataatcaTCAACAATTGCATACAGATTGAATTGcaaatgtttgttaatttgtatgTGCACTGGATAGATTCATGTGtcttaattgttgtttttacatgttttatggtacttctatttttaaagtatgttaatgtatttgaaaatgtgcagaTATGACCAcgaatgtgttatttaattgtcTGAGTCTGATAGGTGTGTGCAACAGCAAAGGCTGTACTTCAGAAGTTGTTTATAACATGGTCAACAGTGTGAACTGTTTTAAACTGCTTTGTTTTGGAAtgcttaaacaaataaaaaagacccTTCCTTGGCAATAAACTATTGCTTGTAAAGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73083 lncRNA upstream 133437 44169485 ~ 44169789 (+) True G58467
TU72912 lncRNA upstream 376595 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 387466 43909588 ~ 43915760 (+) True G58317
TU72891 lncRNA upstream 427503 43873781 ~ 43875723 (+) True G58304
TU72871 lncRNA upstream 622273 43678351 ~ 43680953 (+) True G58291
TU73142 lncRNA downstream 11002 44325151 ~ 44325573 (+) True G58510
TU73145 lncRNA downstream 14122 44328271 ~ 44360062 (+) True G58513
TU73158 lncRNA downstream 72348 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 72348 44386497 ~ 44407568 (+) False G58522
TU73169 lncRNA downstream 99123 44413272 ~ 44483247 (+) True G58527
AMCG00009680 mRNA upstream 22039 44265059 ~ 44281187 (+) True AMCG00009680
AMCG00009682 mRNA upstream 49179 44235551 ~ 44254047 (+) True AMCG00009682
AMCG00009684 mRNA upstream 81013 44221359 ~ 44222213 (+) True AMCG00009684
AMCG00009681 mRNA upstream 97972 44199516 ~ 44205254 (+) True AMCG00009681
AMCG00009679 mRNA upstream 141987 44160582 ~ 44161239 (+) True AMCG00009679
AMCG00009686 mRNA downstream 823 44314972 ~ 44322797 (+) True AMCG00009686
AMCG00009685 mRNA downstream 50382 44364531 ~ 44372415 (+) True AMCG00009685
AMCG00009688 mRNA downstream 59552 44373701 ~ 44381036 (+) True AMCG00009688
AMCG00009689 mRNA downstream 68408 44382557 ~ 44386172 (+) True AMCG00009689
AMCG00009698 mRNA downstream 125425 44439574 ~ 44442056 (+) True AMCG00009698
TU72919 other upstream 367464 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2224985 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3308567 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 4198278 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 4354026 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 72348 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 253216 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 270413 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 318601 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 741916 45056065 ~ 45057874 (+) True G58747

Expression Profile