RNA id: AMCG00009688


Basic Information

Item Value
RNA id AMCG00009688
length 2622
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00009688
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44373701 ~ 44381036 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTGCTGTAAAAGCCACAGGAAACTCAGCTGCTCTCATCATGACGCTGGAGGAAGTGAGCGGGCTGGACTTCGCCTGTCCGGAATCCCTTTTGATCTGCTGAGCTGGGGAGGAGTTCAAAAGTGCCTTCTACAGCGGGAAGAGTCTCACCATGAAGTCCTCGGGTCTGctcctgtgtctctgtctcctgGAGGCAGCGTCGGCCTTTAAGATCTGTGCCTTCAACGCACAACACTTCGGCAACTCCAAGGCCGCCAACGCCAAAGTGATGTCCACTATTGTCAGGATCATCTCGCGCTGTGATGTGTGTCTCATACAAGAGGTGCACGACCAAAAGGGCCGGGCCGTGACAGCGCTGATCAATGCCCTGAACAGGAACAACAAAGACAAGTACGAATACCTGGCGAGCGAACGCCTGGGCAGGAATTCGTACCAGGAGCAGTATGTCTTTGTGTTCAGGTCTGATCGATTGAAAGTCAAGGACAAATACCAGTATCCTGACCAGCAGAAGGGCGACATCGATGCTTTTTCCCGGGAGCCCTTTGTCGTGCGTTTCGAGGCTCCACACACCGCGATTAAAGACCTGGTCCTCATTCCCCAGCACACCAGCCCCTCCAACGCCACCAAGGAGATCGACGAGCTCTACGATGTCTTTCAGGAAGTGAAGCGGCTCTGGAGGATCGATAATGCCATGTTTCTGGGAGATTTCAACGCGGCCTGCGGCTACGTCGCCAAAAAGAACTGGAAGACTATCCGCCTGTACTCTGAGCCGGGCTTCACCTGGCTGATCGACCACAAGACAGACACCACGGTCCGCCAGACCACAGAGTGTGCGATTGTGGTTCACGGAGATGCCTTGCTCAGGGGTATTGTTCCTCAGTCAGCCAAGCCTTTCAACTTTGCCGCTGCGTTCGGCCTCACAGAAGAGGAGGCTCTGGAAGTGAGCGACCATTACCCTGTCGAAGTGGAGCTGAAGGTGGTGCAGCAGAGGGGCCGCTTTGGATCTTCAGGGTCCCAAATCCACTGCTCCCTCAGTCTCCTCACAgccctctccctcttctccttCACTTGCGGCCCACGTCTTTCTCTGTGGCTAATTCTTGCCCAGGCCCTGAAGACCATCCACTCTGCCTGTGGACCAGAGAAGACCCTGTCACGGACGCCAAGCCTTCCTCAGGGGAACGCCGCATTCAGCCAAGGTTTTAGACTGCCATGGGCCAGGATCTTGGCTTGGGACATCCAGAATCAGGCCTGTCCTGTTTTCGCTTGTGCCCTGGAGGTGAGCGACCACTACCCGGTGGAAGTGGAGCTGAAGGAGGTGAGGGCGAGCGGTCGGGGGCTACTGCTGTCTTCTTACGCCAAGCAGGCTCTGGGGCTTCCCGCTCCGACCGCCCGCGCTGTTGTtcccacacacaacacaacggCCATTTAAGCAAAAGCTCCGCGCACTTATTGTGTCTTCTGCGCCGGAGACGGGTGCGGGGAATTCAGGTGTTTGTTCCCAATGATCTCAAAATGACCCAAAAAACGCTACCAGCTGAACGGATCGGAATCAGAAACCAGTCATCCATTTGTGCATCGTTGCCTAGAGAGTGttcccaaattaattaaattaatctcatGCTGTTTTTCATCAGTTCATCAGTTTTCATCCGTTCACTGATGTTCTGTGTTATAAAACGTTTGTCCAATAGATACATTTCAAACCACACCTGTCCCCAAACTACAAATCAAGCACCACTACCACAGATCAGTGGAGGGGTTTAACTGGACTCCCAGACTTCTAACTGTATACcattcattgttgttgttttggtgcCATGATAAATCTTATTCAagtgtatttaatgtgtatattttttgtcttgGAACCATATGCAGTTAAATAGTTCTGCcttctgtgaaaatgtctgatCCACAGTCGAGCAACGTTGCTAAAACCTGCTGCAGGGTGTTTGTGTACTGTTGCGTGTCACTGAATGCCCTTGTTTCCGTTGGGGAACTTGCATGTTAAGTGTATATTGTTATCTCCCTTCTATACTCGAATGCCAAGGAGCAGCCGTGTATTGTGTGTTCTTATTATCACCTATACATTGTACCCCTGGGTATAGCGGCTcctgtttatttgaatgttgGCACAATTGAAACTCTCTGTGTGTCAACAGAGCTTTTGACTGTTAAATTATTGCACGCAAAAGCTGAACAGTGAGGCTGTCCGGCCAACATTTTGGAAACCTCTCATAATTGTAATTGCACATTTTGCCTAAAAACActttgtactgtatataataaagtgtgtgtattatttagCATGTCTGATTGTGTTTAGAGGTTGGTACCAGTATATTGTAAGATGTTgccaatataaaacataatttttgtcAGTATTAATCAAACGTTCTTCGATAATTTGTGTTCAGGGGtccttattttattaagaaacaaaagctGAAGTATGTGACTGTGTTTTAGGTGTGgagatgataataataagatgtttattaaaaacCTGTTTTGTATCTGccaatgctttttaaaacaacaggTTAAGTCTGGATGTATCTGTTACACATCCTTTCTAAGCATTATGTCAAACCAAGACCAAGCCTATCAAATGTCAAG

Function

GO: NA

KEGG:

id description
K11995 DNASE1L; deoxyribonuclease-1-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73145 lncRNA upstream 13639 44328271 ~ 44360062 (+) True G58513
TU73142 lncRNA upstream 48128 44325151 ~ 44325573 (+) True G58510
TU73083 lncRNA upstream 203912 44169485 ~ 44169789 (+) True G58467
TU72912 lncRNA upstream 447070 43921474 ~ 43926631 (+) True G58319
TU72908 lncRNA upstream 457941 43909588 ~ 43915760 (+) True G58317
TU73158 lncRNA downstream 5461 44386497 ~ 44390082 (+) True G58522
TU73159 lncRNA downstream 5461 44386497 ~ 44407568 (+) False G58522
TU73169 lncRNA downstream 32236 44413272 ~ 44483247 (+) True G58527
TU73281 lncRNA downstream 378241 44759277 ~ 44760058 (+) False AMCG00009706
TU73337 lncRNA downstream 511809 44892845 ~ 44893078 (+) True G58666
AMCG00009685 mRNA upstream 1286 44364531 ~ 44372415 (+) True AMCG00009685
AMCG00009686 mRNA upstream 50904 44314972 ~ 44322797 (+) True AMCG00009686
AMCG00009687 mRNA upstream 59552 44303226 ~ 44314149 (+) True AMCG00009687
AMCG00009680 mRNA upstream 92514 44265059 ~ 44281187 (+) True AMCG00009680
AMCG00009682 mRNA upstream 119654 44235551 ~ 44254047 (+) True AMCG00009682
AMCG00009689 mRNA downstream 1521 44382557 ~ 44386172 (+) True AMCG00009689
AMCG00009698 mRNA downstream 58538 44439574 ~ 44442056 (+) True AMCG00009698
AMCG00009696 mRNA downstream 69067 44450103 ~ 44482061 (+) True AMCG00009696
AMCG00009695 mRNA downstream 102931 44483967 ~ 44490079 (+) True AMCG00009695
AMCG00009699 mRNA downstream 111659 44492695 ~ 44502439 (+) True AMCG00009699
TU72919 other upstream 437939 43932952 ~ 43935762 (+) True G58324
TU72303 other upstream 2295460 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 3379042 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 4268753 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 4424501 39948006 ~ 39949200 (+) True G57430
TU73161 other downstream 5461 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 186329 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 203526 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 251714 44632750 ~ 44651967 (+) True G58600
TU73437 other downstream 675029 45056065 ~ 45057874 (+) True G58747

Expression Profile