RNA id: AMCG00009690


Basic Information

Item Value
RNA id AMCG00009690
length 1714
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00009690
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44284878 ~ 44293118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCGCGCTGTGTAAGCCCAGAGGCGGGGGTCGCGGGCGGAGCGGGGGTCCCCGCGGAGGGACTATTTGTCGTCGCGGAGGTGGCGGCGCAGGCTGGAGGAGCGGTTCCAGGGACAGGGCCATCTTTGGTCTAGTTCGCCGGGCGCAGCGCAGCTCAGTGTGTCAAACCCGCATCTCTCCCGCATCTCTCCCGCATCTCTCCCGCACAGCCTGTCAgccgttttgtttttatttctctctctgcactttTCCTCGACAGAGATCTCTAAGGAAGCACAGAGCGCCATGGATGAAGAATATGATGTTATTGTTCTGGGCACCGGCTTGACAGAATGCATTCTGTCTGGGATCATGTCGGTGAATGGAAAGAAGGTGCTGCACATGGATCGAAACCCATACTATGGAGGCGAAAGCTCCTCCATCACTCCCTTGGAAGAGCTGTACAAACGCTTCGGCCTCCCGGACACCCCCCCAGAGTCGATGGGACGAGGACGGGATTGGAACGTGGATCTGATTCCCAAATTCCTCATGGCAAACGGCCAGCTAGTGAAGATGCTGCTCTACACAGAGGTCACCAGGTACCTGGACTTCAAGGTGGTGGAGGGAAGCTTCGTCTACAAGGGAGGGAAGATCTACAAAGTGCCGTCCACAGAGACTGAGGCGCTAGCTTCAAATCTGATGGGCATGTTCGAGAAGAGGAGGTTCCGGAAGTTCCTAGTCTTCGTGGCCAACTTCGACGAGAATGACCCCAAGACCTTCGAGGGAGTGGACCCCAAACTGACCACCATGAGGGATGTTTACAAGAAGTTTGACCTGGGCCAAGACGTCATCGACTTCACTGGCCATGCCTTGGCCCTCTACAGGACAGACGACTACCTGGACCAGCCTTGCCTCGAGACCATTAACCGCATCAAACTGTACAGCGAGTCGCTGGCACGCTACGGAAAAAGTCCTTACCTGTATCCCCTGTATGGGCTGGGAGAGCTACCTCAGGGATTCGCCAGGTTAAGTGCAATTTACGGAGGGACCTACATGCTGAATAAGCCAGTGGAAGAGATTGTGATGGAGAACGGGCACGTCGTTGGGGTGAAATCCGAGGGAGAGGTGGCACGCTGTAAACAGCTGATCTGTGACCCCAGTTATCTCCAAGACCGCGTGAGGAAGGCCGGTCAGGTGATCAGGGTCATCTGCATCCTGAGTCACCCCATCAAGAACACCAACGATGCCAACTCCTGCCAGATCATCATCCCTCAGAACCAAGTCAACCGCAAGTCGGATATCTACGTGTGCATGATCTCCTACGCCCACAACGTGGCAGCCCAGGGAAAATACATCGCCATCGTCAGCACCACCGTAGAAACCAGTGAGCCCGAGACGGAGATCGAGCCGGCGCTGGAGCTCCTCGAGCCCATAGACCAAAAGTTCGTGGCCATCAGTGACCTTTATGAAGCCACGGACGATGGCAGCGAGAGCCAGATCTTTGCGTCTCGCTCCTACGATGCCACCACTCACTTCGAGACCACCTGCAACGACATCAAAGACATCTACAAGCGCATGACCGGCAGCGACTTTGACTTTGAGAACATGAAGCGCAAACAGAACGACGTCTTCGGGGAGGACGAGCAGTGAGGCGGGGGTTGTCCGAGGGAGGCGGGGCAAGCAGGGAGTAAGAGATGGAGtaggggagaggaggggagtgGTCGGTGgactgggg

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73073 lncRNA downstream 163811 44115650 ~ 44121067 (-) True G58459
TU73070 lncRNA downstream 174595 44109969 ~ 44110283 (-) True G58457
TU73069 lncRNA downstream 175163 44109336 ~ 44109715 (-) True G58456
TU73065 lncRNA downstream 180168 44097276 ~ 44104710 (-) True G58452
TU73002 lncRNA downstream 307392 43977285 ~ 43977486 (-) True G58395
TU73143 lncRNA upstream 32039 44325157 ~ 44325573 (-) True G58511
TU73196 lncRNA upstream 187934 44481052 ~ 44488354 (-) True G58548
TU73197 lncRNA upstream 187934 44481052 ~ 44526239 (-) False G58548
TU73236 lncRNA upstream 249825 44542943 ~ 44543177 (-) True G58585
TU73256 lncRNA upstream 365298 44658416 ~ 44659098 (-) True G58605
AMCG00009683 mRNA downstream 20756 44256415 ~ 44264122 (-) True AMCG00009683
AMCG00009678 mRNA downstream 210762 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009677 mRNA downstream 220411 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009671 mRNA downstream 278075 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009672 mRNA downstream 290030 43991714 ~ 43994848 (-) False AMCG00009672
AMCG00009693 mRNA upstream 30867 44323985 ~ 44328354 (-) True AMCG00009693
AMCG00009692 mRNA upstream 45945 44339063 ~ 44342291 (-) True AMCG00009692
AMCG00009691 mRNA upstream 53352 44346470 ~ 44354753 (-) True AMCG00009691
AMCG00009697 mRNA upstream 208669 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009704 mRNA upstream 360733 44653851 ~ 44654614 (-) True AMCG00009704
TU73015 other downstream 289224 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 339581 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1611171 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 4127407 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5447314 38835316 ~ 38837564 (-) False AMCG00009472
TU73231 other upstream 215135 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 248776 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 272951 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 489800 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 1027725 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044152 True 3517 mRNA 0.42 11 NC_007134.7 26063149 ~ 26077038 (-)
grasscarp (Ctenopharyngodon idella) CI01000020_05716873_05721297.mRNA True 1670 mRNA 0.48 10 CI01000020 5716505 ~ 5721297 (-)