RNA id: AMCG00009691


Basic Information

Item Value
RNA id AMCG00009691
length 1269
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00009691
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44346470 ~ 44354753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCAAATCAGTCCCATTTAAAGGAAGCTCCAGTGAGAGTCACAGTCCATCTTGGGAGCTCAGCTGCTCTGCTCAGAACTCAATGAAGCTGCAGGAGACGCCACACAAACCGGCAGAGGGGAACCGCCCTGTAGCCCAGACCAGAGAAGCAGGCGAGATGTATCTGTACCGGGTGAAGATGATCTCGCTGGCCGTTCTCTGTATCCTACTGGGCACTTATGTGATGTTTCTGAAATACCACAAGGACAGATGCAGTGAACTGAGAGATGAGAACAGGAACCTGTCTGAGACACTCGCTGCTCTGAAACAATATCAAGACCTTCATACCAGAGACTGTAAACTCTGTCCTGTGGGCTGGGAGCTCAACGATGGAAAGTGCTACTTCTTCTCCACTGATGGAAAGAACTGGGATGAGAGTCATGATGACTGTGTCAGAAAGGGGGGACACTTGGTCATTATAGGCACTGAGGATGAGCAGAGattcttaaaaaggaaaattgaCAATGTGGCAGGAAACAATTACTGGATTGGACTGACTGATGCAGCTGCTGAAGGAGTCTGGCGCTGGGTGGACAACACACCTCTCGGGGATCTCATATTCTGGGCCACAAAAAAGATACGTAAAGATGAGCCTGATAACTGGACAGGAGAAAATCCTTTAGGGGAGGACTGTGCATGTTTGAACTCATTAACAGAACCATTACATAACTGGTTTGATGAATCTTGCACCAACGCTTTGAGACGAatctgtgaaacaaaaacactggaaaaaCCCAACTAACAAGaaacaatacatgtttatttttttaataggagTGTCTTAAACTGTCCTAAGCACACAGTCACTCCAGTCAGTAGTAGTATTTTAGAAATCCAGTGTTTCGAGGCGCAGGTTTGCTGTGTTGCCACTAGTTTATTTAGACCCCCATGTGAAGAGACTCAGAGCGACAGGAAGGCAGGGCACTGAGGACGATCAATCAGCCCCCAGATTACTGCTCCTCTTGGCCGACTGTTCAGCTCTCTATACAGCTTTCAGTGAAGCCAACAGCTACTGTGCTGTCTTACTTTACTATCTAAGACAATCCAATCTTTATTGATCTCTGTAAATGATAGTACTATACATTACACCACAAACTACACTCAAATGATTTAGAATGCTTATGAAACCCAACTTTGAATCTGTTAATGTCTCACTGAAGATTAATTGTTACAAGAGTATAATTTGGATGACTGTATGAAATGATGccattaaatgtttctgttgctTGA

Function

GO: NA

KEGG:

id description
K10059 CLEC4E, MINCLE; C-type lectin domain family 4 member E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73143 lncRNA downstream 20897 44325157 ~ 44325573 (-) True G58511
TU73073 lncRNA downstream 225403 44115650 ~ 44121067 (-) True G58459
TU73070 lncRNA downstream 236187 44109969 ~ 44110283 (-) True G58457
TU73069 lncRNA downstream 236755 44109336 ~ 44109715 (-) True G58456
TU73065 lncRNA downstream 241760 44097276 ~ 44104710 (-) True G58452
TU73196 lncRNA upstream 126299 44481052 ~ 44488354 (-) True G58548
TU73197 lncRNA upstream 126299 44481052 ~ 44526239 (-) False G58548
TU73236 lncRNA upstream 188190 44542943 ~ 44543177 (-) True G58585
TU73256 lncRNA upstream 303663 44658416 ~ 44659098 (-) True G58605
TU73263 lncRNA upstream 307128 44661881 ~ 44662333 (-) True G58611
AMCG00009692 mRNA downstream 4179 44339063 ~ 44342291 (-) True AMCG00009692
AMCG00009693 mRNA downstream 18116 44323985 ~ 44328354 (-) True AMCG00009693
AMCG00009690 mRNA downstream 53352 44284878 ~ 44293118 (-) True AMCG00009690
AMCG00009683 mRNA downstream 82348 44256415 ~ 44264122 (-) True AMCG00009683
AMCG00009678 mRNA downstream 272354 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009697 mRNA upstream 147034 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009704 mRNA upstream 299098 44653851 ~ 44654614 (-) True AMCG00009704
AMCG00009705 mRNA upstream 301291 44656044 ~ 44657724 (-) True AMCG00009705
AMCG00009710 mRNA upstream 327911 44682664 ~ 44693533 (-) True AMCG00009710
AMCG00009713 mRNA upstream 434377 44789130 ~ 44808487 (-) True AMCG00009713
TU73015 other downstream 350816 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 401173 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1672763 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 4188999 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5508906 38835316 ~ 38837564 (-) False AMCG00009472
TU73231 other upstream 153500 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 187141 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 211316 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 428165 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 966090 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile