RNA id: AMCG00009692


Basic Information

Item Value
RNA id AMCG00009692
length 504
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00009692
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44339063 ~ 44342291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggTATGTCGCGACGCGTGTGTGAGACACTTGTCTATTGTAGTCTCTAGTAAGCAGCAGCCAGTAGACCAGTTTGCTGCTTGTGGTGAGGAAGAGGCAATACCAAGCGCCAGCCATGAGCCCATAACTTCAGATTGGACAGATCTTCATACCAGAGACTGTAAAGTCTGTCCTGTGGACTGGGAGATCAACGGTGGAAAGTGCTACTTCTTCTCCACTGATGAAAAGAACTGGGATGAGAGTCGTGATGACTGTGTCAGAAGGGGTGGACACTTGGCCATTATAGGCACTGAGGAGGAGCAGAGGTATAAAGTCATAACTATCTACACGTGTagATTCTGGGGCACGAAACAGACAGGTAGAGAAGAGCCTGATAACTGGACAGGAGACAATCCTTTAGGGGAGAACTGTGcatgtatgaatacattcatttggTTTGATGACTCTTGCACCAAAGCTTACAAACGAATCTGTGAAACAAGAGCACTGGAAAAACCCAAATAA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73143 lncRNA downstream 13490 44325157 ~ 44325573 (-) True G58511
TU73073 lncRNA downstream 217996 44115650 ~ 44121067 (-) True G58459
TU73070 lncRNA downstream 228780 44109969 ~ 44110283 (-) True G58457
TU73069 lncRNA downstream 229348 44109336 ~ 44109715 (-) True G58456
TU73065 lncRNA downstream 234353 44097276 ~ 44104710 (-) True G58452
TU73196 lncRNA upstream 138761 44481052 ~ 44488354 (-) True G58548
TU73197 lncRNA upstream 138761 44481052 ~ 44526239 (-) False G58548
TU73236 lncRNA upstream 200652 44542943 ~ 44543177 (-) True G58585
TU73256 lncRNA upstream 316125 44658416 ~ 44659098 (-) True G58605
TU73263 lncRNA upstream 319590 44661881 ~ 44662333 (-) True G58611
AMCG00009693 mRNA downstream 10709 44323985 ~ 44328354 (-) True AMCG00009693
AMCG00009690 mRNA downstream 45945 44284878 ~ 44293118 (-) True AMCG00009690
AMCG00009683 mRNA downstream 74941 44256415 ~ 44264122 (-) True AMCG00009683
AMCG00009678 mRNA downstream 264947 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009677 mRNA downstream 274596 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009691 mRNA upstream 4179 44346470 ~ 44354753 (-) True AMCG00009691
AMCG00009697 mRNA upstream 159496 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009704 mRNA upstream 311560 44653851 ~ 44654614 (-) True AMCG00009704
AMCG00009705 mRNA upstream 313753 44656044 ~ 44657724 (-) True AMCG00009705
AMCG00009710 mRNA upstream 340373 44682664 ~ 44693533 (-) True AMCG00009710
TU73015 other downstream 343409 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 393766 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1665356 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 4181592 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5501499 38835316 ~ 38837564 (-) False AMCG00009472
TU73231 other upstream 165962 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 199603 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 223778 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 440627 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 978552 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile