RNA id: AMCG00009693


Basic Information

Item Value
RNA id AMCG00009693
length 438
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00009693
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 44323985 ~ 44328354 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATCTGTACCGGGTGAAGATGATCTCGCTGGCCGTTCTCTATCCTCAGGAAGGGGGTGACTGTGAGATGCTGAAAGCCAAGTTTGACCATCTCTCCTCTCTGATGAACACAACAGAGGTGCTGGAAGGTAAGTACACAGGACTGGTTGGCACACATGCTGCTCTGGAAGGATCTCTTAACGCACTGAAAGAAGAGAACAGACAACTCAGCGATGCTCGCACTGATCTGCAGAGACAGCTCTCAGACCTTCGTACCAGAGACTGTAAACCCTGTCCTGAGGGCTGGGAGACAAGTGATGGAAAGTGCTACTTCTTCTCCACTGATGAAAAGAACTGGGATGAGAGTCGTGATGACTGTGTCAGAAGGGGGGGACACTTGGCCATTATACGCACTAGACAGGAGCAGGATTTAGCTCCTTCCAAGCCTGCATTCTGA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73073 lncRNA downstream 202918 44115650 ~ 44121067 (-) True G58459
TU73070 lncRNA downstream 213702 44109969 ~ 44110283 (-) True G58457
TU73069 lncRNA downstream 214270 44109336 ~ 44109715 (-) True G58456
TU73065 lncRNA downstream 219275 44097276 ~ 44104710 (-) True G58452
TU73002 lncRNA downstream 346499 43977285 ~ 43977486 (-) True G58395
TU73196 lncRNA upstream 152698 44481052 ~ 44488354 (-) True G58548
TU73197 lncRNA upstream 152698 44481052 ~ 44526239 (-) False G58548
TU73236 lncRNA upstream 214589 44542943 ~ 44543177 (-) True G58585
TU73256 lncRNA upstream 330062 44658416 ~ 44659098 (-) True G58605
TU73263 lncRNA upstream 333527 44661881 ~ 44662333 (-) True G58611
AMCG00009690 mRNA downstream 30867 44284878 ~ 44293118 (-) True AMCG00009690
AMCG00009683 mRNA downstream 59863 44256415 ~ 44264122 (-) True AMCG00009683
AMCG00009678 mRNA downstream 249869 44073850 ~ 44074116 (-) True AMCG00009678
AMCG00009677 mRNA downstream 259518 44051410 ~ 44064467 (-) True AMCG00009677
AMCG00009671 mRNA downstream 317182 43996712 ~ 44006803 (-) True AMCG00009671
AMCG00009692 mRNA upstream 10709 44339063 ~ 44342291 (-) True AMCG00009692
AMCG00009691 mRNA upstream 18116 44346470 ~ 44354753 (-) True AMCG00009691
AMCG00009697 mRNA upstream 173433 44501787 ~ 44512102 (-) True AMCG00009697
AMCG00009704 mRNA upstream 325497 44653851 ~ 44654614 (-) True AMCG00009704
AMCG00009705 mRNA upstream 327690 44656044 ~ 44657724 (-) True AMCG00009705
TU73015 other downstream 328331 43989511 ~ 43995654 (-) True AMCG00009672
TU72928 other downstream 378688 43482421 ~ 43945297 (-) True G58333
TU72548 other downstream 1650278 42669127 ~ 42673707 (-) True G58025
TU71924 other downstream 4166514 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 5486421 38835316 ~ 38837564 (-) False AMCG00009472
TU73231 other upstream 179899 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 213540 44541894 ~ 44542809 (-) True G58584
TU73240 other upstream 237715 44566069 ~ 44566834 (-) True G58589
TU73318 other upstream 454564 44782918 ~ 44785134 (-) True G58653
TU73631 other upstream 992489 45320843 ~ 45323950 (-) True AMCG00009748

Expression Profile